Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 BAD-202ENST00000394531 631 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC093724.1-201ENST00000448659 1027 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 BAD-207ENST00000544785 525 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC011467.4-201ENST00000594891 528 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AL158211.3-201ENST00000607385 239 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC007967.4-201ENST00000614700 386 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AC093512.1-201ENST00000617969 520 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AL035456.1-201ENST00000456064 1369 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 AP3S2-216ENST00000617003 1561 ntBASIC11.24□□□□□ -0.61
UPK3BQ9BT76 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
UPK3BQ9BT76 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 GGT4P-201ENST00000623672 1708 ntBASIC11.23□□□□□ -0.61
UPK3BQ9BT76 LINC01144-201ENST00000626198 1710 ntBASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 WRB-204ENST00000398753 699 ntTSL 3 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AL353705.2-201ENST00000428243 662 ntBASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AC024267.1-201ENST00000582320 895 ntBASIC11.23□□□□□ -0.61
UPK3BQ9BT76 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
UPK3BQ9BT76 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms