Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 AC090616.6-203ENST00000579186 1945 ntBASIC17.35■□□□□ 0.37
CCDC42Q96M95 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 AC092127.1-201ENST00000567093 3455 ntBASIC17.34■□□□□ 0.37
CCDC42Q96M95 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 AC134407.2-201ENST00000625089 1978 ntBASIC17.34■□□□□ 0.37
CCDC42Q96M95 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC42Q96M95 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC42Q96M95 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.33■□□□□ 0.37
CCDC42Q96M95 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CCDC42Q96M95 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC42Q96M95 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC098831.1-202ENST00000438821 336 ntBASIC17.33■□□□□ 0.36
CCDC42Q96M95 HCG4B-203ENST00000450128 991 ntBASIC17.33■□□□□ 0.36
CCDC42Q96M95 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 UNC93B6-202ENST00000528242 690 ntBASIC17.33■□□□□ 0.36
CCDC42Q96M95 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC002347.1-201ENST00000569543 541 ntBASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC007064.4-201ENST00000637740 555 ntBASIC17.33■□□□□ 0.36
CCDC42Q96M95 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms