Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATG4AQ8WYN0 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
ATG4AQ8WYN0 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.66■□□□□ 0.26
ATG4AQ8WYN0 FOXO1B-201ENST00000504678 1527 ntBASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AC074386.1-202ENST00000463561 864 ntBASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 RPL13AP23-201ENST00000480739 586 ntBASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 AC092865.6-201ENST00000642101 219 ntBASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.65■□□□□ 0.26
ATG4AQ8WYN0 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.64■□□□□ 0.26
ATG4AQ8WYN0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 AL161645.1-201ENST00000622716 1255 ntBASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATG4AQ8WYN0 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 NORAD-201ENST00000565493 5339 ntBASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATG4AQ8WYN0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms