Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ENSA-206ENST00000361631 725 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 COX20-201ENST00000366528 568 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 KRT18P65-201ENST00000439811 1286 ntBASIC9.95□□□□□ -0.82
LINC00643Q86TS7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 AC013467.2-201ENST00000605472 835 ntBASIC9.95□□□□□ -0.82
LINC00643Q86TS7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 FUK-202ENST00000378912 3925 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 POM121L4P-202ENST00000427789 1891 ntBASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CKBP1-201ENST00000565489 1086 ntBASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC9.94□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms