Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.85□□□□□ -0.03
RNF4P78317 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RNF4P78317 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.85□□□□□ -0.03
RNF4P78317 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.85□□□□□ -0.03
RNF4P78317 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.85□□□□□ -0.03
RNF4P78317 RN7SL618P-201ENST00000477850 296 ntBASIC14.85□□□□□ -0.03
RNF4P78317 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RNF4P78317 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.85□□□□□ -0.03
RNF4P78317 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.85□□□□□ -0.03
RNF4P78317 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 AL844908.2-201ENST00000609461 460 ntBASIC14.85□□□□□ -0.03
RNF4P78317 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
RNF4P78317 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.85□□□□□ -0.03
RNF4P78317 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 AC022144.1-201ENST00000602255 1580 ntBASIC14.85□□□□□ -0.03
RNF4P78317 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
RNF4P78317 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.85□□□□□ -0.03
RNF4P78317 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RNF4P78317 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RNF4P78317 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
RNF4P78317 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
RNF4P78317 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.84□□□□□ -0.03
RNF4P78317 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
RNF4P78317 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.84□□□□□ -0.03
RNF4P78317 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
RNF4P78317 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.84□□□□□ -0.03
RNF4P78317 EEF1DP4-201ENST00000446006 880 ntBASIC14.84□□□□□ -0.03
RNF4P78317 AC009477.1-201ENST00000452936 217 ntBASIC14.84□□□□□ -0.03
RNF4P78317 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 AL512361.1-201ENST00000554200 418 ntBASIC14.84□□□□□ -0.03
RNF4P78317 AC010336.2-201ENST00000564226 506 ntBASIC14.84□□□□□ -0.03
RNF4P78317 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
RNF4P78317 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
RNF4P78317 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.84□□□□□ -0.03
RNF4P78317 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RNF4P78317 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.84□□□□□ -0.03
RNF4P78317 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.83□□□□□ -0.03
RNF4P78317 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RNF4P78317 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RNF4P78317 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
RNF4P78317 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
RNF4P78317 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RNF4P78317 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
RNF4P78317 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RNF4P78317 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms