Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 MIR770-201ENST00000390219 98 ntBASIC16.58■□□□□ 0.24
NEK3P51956 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.58■□□□□ 0.24
NEK3P51956 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 POU5F1P6-201ENST00000466990 990 ntBASIC16.58■□□□□ 0.24
NEK3P51956 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 MIR6080-201ENST00000617359 66 ntBASIC16.58■□□□□ 0.24
NEK3P51956 TUBB3P1-201ENST00000405796 1332 ntBASIC16.58■□□□□ 0.24
NEK3P51956 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NEK3P51956 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.58■□□□□ 0.24
NEK3P51956 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.58■□□□□ 0.24
NEK3P51956 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 AC073439.1-201ENST00000624121 1774 ntBASIC16.58■□□□□ 0.24
NEK3P51956 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.58■□□□□ 0.24
NEK3P51956 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NEK3P51956 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.57■□□□□ 0.24
NEK3P51956 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 AC051619.7-201ENST00000568314 623 ntBASIC16.57■□□□□ 0.24
NEK3P51956 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 AC020765.3-201ENST00000613051 740 ntBASIC16.57■□□□□ 0.24
NEK3P51956 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.57■□□□□ 0.24
NEK3P51956 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
NEK3P51956 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
NEK3P51956 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
NEK3P51956 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 PCGF3-213ENST00000620529 1899 ntBASIC16.56■□□□□ 0.24
NEK3P51956 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 GPAA1P2-202ENST00000606848 1787 ntBASIC16.56■□□□□ 0.24
NEK3P51956 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 AC008677.1-201ENST00000519230 1561 ntBASIC16.56■□□□□ 0.24
NEK3P51956 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.56■□□□□ 0.24
NEK3P51956 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.56■□□□□ 0.24
NEK3P51956 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 KLF2P3-201ENST00000451977 1087 ntBASIC16.56■□□□□ 0.24
NEK3P51956 AC125807.1-201ENST00000483097 614 ntBASIC16.56■□□□□ 0.24
NEK3P51956 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.56■□□□□ 0.24
NEK3P51956 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.56■□□□□ 0.24
NEK3P51956 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 AC073347.1-201ENST00000421633 2643 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms