Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC097359.3-201ENST00000603982 1210 ntBASIC16.63■□□□□ 0.25
PTPN9P43378 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.62■□□□□ 0.25
PTPN9P43378 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PTPN9P43378 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PTPN9P43378 RPL37AP1-201ENST00000412502 279 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 AC125807.1-201ENST00000483097 614 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.62■□□□□ 0.25
PTPN9P43378 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.62■□□□□ 0.25
PTPN9P43378 AC140878.1-201ENST00000565277 250 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.62■□□□□ 0.25
PTPN9P43378 SPDYE12P-201ENST00000618416 771 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
PTPN9P43378 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
PTPN9P43378 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PTPN9P43378 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 FO538757.1-201ENST00000623083 1397 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN9P43378 PRAL-201ENST00000624952 3286 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 PAUPAR-201ENST00000630360 2965 ntBASIC16.62■□□□□ 0.25
PTPN9P43378 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN9P43378 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PTPN9P43378 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN9P43378 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN9P43378 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN9P43378 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.61■□□□□ 0.25
PTPN9P43378 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.61■□□□□ 0.25
PTPN9P43378 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PTPN9P43378 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 AL596257.1-201ENST00000641463 2694 ntBASIC16.61■□□□□ 0.25
PTPN9P43378 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN9P43378 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN9P43378 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms