Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXA9P31269 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXA9P31269 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HOXA9P31269 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXA9P31269 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HOXA9P31269 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HOXA9P31269 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.57■□□□□ 0.24
HOXA9P31269 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXA9P31269 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXA9P31269 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXA9P31269 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.57■□□□□ 0.24
HOXA9P31269 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.57■□□□□ 0.24
HOXA9P31269 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXA9P31269 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.56■□□□□ 0.24
HOXA9P31269 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 AC093525.8-201ENST00000624099 1342 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 RPL7P3-201ENST00000441388 714 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 AL355864.2-201ENST00000447420 863 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.56■□□□□ 0.24
HOXA9P31269 KRT18P43-201ENST00000469825 1281 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.56■□□□□ 0.24
HOXA9P31269 AP000812.2-201ENST00000538934 718 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 AL583810.1-201ENST00000553344 1045 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HOXA9P31269 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 MIR4525-201ENST00000580000 75 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 AC097359.3-201ENST00000603982 1210 ntBASIC16.56■□□□□ 0.24
HOXA9P31269 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.56■□□□□ 0.24
HOXA9P31269 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.56■□□□□ 0.24
HOXA9P31269 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.56■□□□□ 0.24
HOXA9P31269 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HOXA9P31269 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.56■□□□□ 0.24
HOXA9P31269 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXA9P31269 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HOXA9P31269 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
HOXA9P31269 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.55■□□□□ 0.24
HOXA9P31269 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 TUBB1P2-201ENST00000422712 1306 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 TUBB1P1-201ENST00000503144 1300 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 FAM86MP-201ENST00000340703 885 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HOXA9P31269 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXA9P31269 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXA9P31269 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 ACTBP11-201ENST00000436287 1126 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXA9P31269 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 VDAC1P7-201ENST00000462417 847 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HOXA9P31269 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXA9P31269 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 AP001063.1-201ENST00000568332 529 ntBASIC16.55■□□□□ 0.24
HOXA9P31269 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXA9P31269 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HOXA9P31269 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXA9P31269 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HOXA9P31269 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXA9P31269 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms