Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH3P22223 HLA-H-201ENST00000383620 1096 ntBASIC15.81■□□□□ 0.12
CDH3P22223 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH3P22223 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH3P22223 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH3P22223 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH3P22223 KLF2P3-201ENST00000451977 1087 ntBASIC15.81■□□□□ 0.12
CDH3P22223 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CDH3P22223 AC125807.1-201ENST00000483097 614 ntBASIC15.81■□□□□ 0.12
CDH3P22223 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH3P22223 RARRES2P9-201ENST00000565168 469 ntBASIC15.81■□□□□ 0.12
CDH3P22223 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH3P22223 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH3P22223 AP3S2-216ENST00000617003 1561 ntBASIC15.81■□□□□ 0.12
CDH3P22223 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH3P22223 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH3P22223 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
CDH3P22223 AC079328.2-201ENST00000561241 3354 ntBASIC15.81■□□□□ 0.12
CDH3P22223 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH3P22223 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDH3P22223 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH3P22223 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH3P22223 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 HLA-A-202ENST00000376806 1854 ntBASIC15.8■□□□□ 0.12
CDH3P22223 PCGF3-213ENST00000620529 1899 ntBASIC15.8■□□□□ 0.12
CDH3P22223 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 MIR770-201ENST00000390219 98 ntBASIC15.8■□□□□ 0.12
CDH3P22223 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.8■□□□□ 0.12
CDH3P22223 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDH3P22223 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.8■□□□□ 0.12
CDH3P22223 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH3P22223 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH3P22223 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH3P22223 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CDH3P22223 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CDH3P22223 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH3P22223 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 AC107890.1-201ENST00000422478 521 ntBASIC15.79■□□□□ 0.12
CDH3P22223 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH3P22223 AC098859.1-201ENST00000502915 1238 ntBASIC15.79■□□□□ 0.12
CDH3P22223 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH3P22223 RNA5SP410-201ENST00000516285 106 ntBASIC15.79■□□□□ 0.12
CDH3P22223 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH3P22223 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH3P22223 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 AC003101.2-201ENST00000612557 442 ntBASIC15.79■□□□□ 0.12
CDH3P22223 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
CDH3P22223 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH3P22223 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms