Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 LRRC23-210ENST00000449039 729 ntTSL 322.52■■□□□ 1.21e-8■■■■■ 103.4
SF3B1O75533 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.43■■□□□ 1.182e-6■■■■■ 103.4
SF3B1O75533 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.42■■□□□ 1.181e-8■■■■■ 103.4
SF3B1O75533 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.42■■□□□ 1.181e-8■■■■■ 103.4
SF3B1O75533 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.41■■□□□ 1.181e-8■■■■■ 103.4
SF3B1O75533 OS9-208ENST00000546916 1028 ntTSL 222.41■■□□□ 1.186e-6■■■■■ 103.4
SF3B1O75533 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.171e-8■■■■■ 103.4
SF3B1O75533 NCKIPSD-206ENST00000439518 1214 ntTSL 1 (best)22.33■■□□□ 1.171e-8■■■■■ 103.4
SF3B1O75533 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.32■■□□□ 1.166e-6■■■■■ 103.4
SF3B1O75533 RDX-211ENST00000530749 2558 ntTSL 222.27■■□□□ 1.162e-6■■■■■ 103.4
SF3B1O75533 RFXANK-214ENST00000545522 888 ntTSL 222.26■■□□□ 1.151e-8■■■■■ 103.4
SF3B1O75533 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.2■■□□□ 1.146e-6■■■■■ 103.4
SF3B1O75533 SCAP-204ENST00000416847 683 ntTSL 322.15■■□□□ 1.144e-6■■■■■ 103.4
SF3B1O75533 FAM135A-215ENST00000515280 546 ntTSL 522.12■■□□□ 1.131e-8■■■■■ 103.4
SF3B1O75533 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.11■■□□□ 1.136e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-214ENST00000587337 563 ntTSL 422.02■■□□□ 1.121e-8■■■■■ 103.4
SF3B1O75533 RNF40-210ENST00000566811 569 ntTSL 221.97■■□□□ 1.111e-8■■■■■ 103.4
SF3B1O75533 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11e-8■■■■■ 103.4
SF3B1O75533 TRADD-204ENST00000566104 669 ntTSL 221.92■■□□□ 1.11e-8■■■■■ 103.4
SF3B1O75533 BRD4-207ENST00000595926 582 ntTSL 221.86■■□□□ 1.096e-6■■■■■ 103.4
SF3B1O75533 SHROOM1-204ENST00000440118 1080 ntTSL 221.81■■□□□ 1.081e-8■■■■■ 103.4
SF3B1O75533 THAP7-205ENST00000471723 653 ntTSL 321.76■■□□□ 1.071e-8■■■■■ 103.4
SF3B1O75533 AP2A2-205ENST00000525796 551 ntTSL 521.76■■□□□ 1.071e-8■■■■■ 103.4
SF3B1O75533 GORASP1-217ENST00000473827 574 ntTSL 321.75■■□□□ 1.076e-6■■■■■ 103.4
SF3B1O75533 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.061e-8■■■■■ 103.4
SF3B1O75533 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.7■■□□□ 1.066e-6■■■■■ 103.4
SF3B1O75533 RFXANK-210ENST00000541873 1002 ntTSL 221.68■■□□□ 1.061e-8■■■■■ 103.4
SF3B1O75533 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.66■■□□□ 1.062e-12■■■■■ 103.4
SF3B1O75533 RMDN3-208ENST00000560460 931 ntTSL 521.56■■□□□ 1.041e-8■■■■■ 103.4
SF3B1O75533 ACAP2-212ENST00000481463 561 ntTSL 321.41■■□□□ 1.026e-6■■■■■ 103.4
SF3B1O75533 RAB11FIP4-207ENST00000581460 617 ntTSL 421.4■■□□□ 1.021e-8■■■■■ 103.4
SF3B1O75533 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.016e-6■■■■■ 103.4
SF3B1O75533 CD151-216ENST00000530155 493 ntTSL 421.29■■□□□ 11e-8■■■■■ 103.4
SF3B1O75533 CD151-206ENST00000525333 561 ntTSL 421.29■■□□□ 11e-8■■■■■ 103.4
SF3B1O75533 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.25■□□□□ 0.996e-6■■■■■ 103.4
SF3B1O75533 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.25■□□□□ 0.996e-6■■■■■ 103.4
SF3B1O75533 NTAN1-208ENST00000568320 667 ntTSL 221.25■□□□□ 0.996e-6■■■■■ 103.4
SF3B1O75533 RFXANK-215ENST00000593273 865 ntTSL 321.21■□□□□ 0.991e-8■■■■■ 103.4
SF3B1O75533 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.2■□□□□ 0.981e-8■■■■■ 103.4
SF3B1O75533 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.986e-6■■■■■ 103.4
SF3B1O75533 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.986e-6■■■■■ 103.4
SF3B1O75533 GORASP1-207ENST00000427459 553 ntTSL 421.16■□□□□ 0.986e-6■■■■■ 103.4
SF3B1O75533 GORASP1-214ENST00000466443 544 ntTSL 421.16■□□□□ 0.986e-6■■■■■ 103.4
SF3B1O75533 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.15■□□□□ 0.982e-6■■■■■ 103.4
SF3B1O75533 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.972e-6■■■■■ 103.4
SF3B1O75533 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.13■□□□□ 0.972e-6■■■■■ 103.4
SF3B1O75533 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.05■□□□□ 0.962e-12■■■■■ 103.4
SF3B1O75533 PPOX-207ENST00000468968 904 ntTSL 521.05■□□□□ 0.962e-12■■■■■ 103.4
SF3B1O75533 FCHSD1-203ENST00000518499 714 ntTSL 321.04■□□□□ 0.961e-8■■■■■ 103.4
SF3B1O75533 PLCG1-206ENST00000470528 510 ntTSL 421.02■□□□□ 0.952e-12■■■■■ 103.4
SF3B1O75533 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21■□□□□ 0.952e-12■■■■■ 103.4
SF3B1O75533 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.97■□□□□ 0.951e-8■■■■■ 103.4
SF3B1O75533 THRB-210ENST00000447414 575 ntTSL 420.9■□□□□ 0.949e-9■■■■■ 103.4
SF3B1O75533 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.89■□□□□ 0.932e-12■■■■■ 103.4
SF3B1O75533 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.84■□□□□ 0.932e-6■■■■■ 103.4
SF3B1O75533 TRADD-203ENST00000563348 833 ntTSL 220.8■□□□□ 0.921e-8■■■■■ 103.4
SF3B1O75533 LRP8-209ENST00000480045 3231 ntTSL 520.74■□□□□ 0.912e-7■■■■■ 103.4
SF3B1O75533 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.911e-8■■■■■ 103.4
SF3B1O75533 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.7■□□□□ 0.91e-8■■■■■ 103.4
SF3B1O75533 UBE2J2-211ENST00000466752 886 ntTSL 320.7■□□□□ 0.94e-6■■■■■ 103.4
SF3B1O75533 CD151-211ENST00000526693 771 ntTSL 320.65■□□□□ 0.91e-8■■■■■ 103.4
SF3B1O75533 FAM135A-216ENST00000515323 1926 ntTSL 520.61■□□□□ 0.891e-8■■■■■ 103.4
SF3B1O75533 DDX51-201ENST00000329073 2341 ntTSL 520.6■□□□□ 0.896e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-216ENST00000488418 750 ntTSL 220.59■□□□□ 0.896e-6■■■■■ 103.4
SF3B1O75533 RMDN3-206ENST00000558560 604 ntTSL 520.55■□□□□ 0.881e-8■■■■■ 103.4
SF3B1O75533 C19orf24-203ENST00000485191 1675 ntTSL 220.55■□□□□ 0.881e-8■■■■■ 103.4
SF3B1O75533 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.53■□□□□ 0.886e-6■■■■■ 103.4
SF3B1O75533 CD151-212ENST00000527341 797 ntTSL 320.47■□□□□ 0.871e-8■■■■■ 103.4
SF3B1O75533 CD151-204ENST00000524748 793 ntTSL 520.47■□□□□ 0.871e-8■■■■■ 103.4
SF3B1O75533 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.876e-6■■■■■ 103.4
SF3B1O75533 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.861e-8■■■■■ 103.4
SF3B1O75533 EHMT1-207ENST00000472849 708 ntTSL 320.38■□□□□ 0.856e-6■■■■■ 103.4
SF3B1O75533 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.851e-8■■■■■ 103.4
SF3B1O75533 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.851e-8■■■■■ 103.4
SF3B1O75533 POLR2E-207ENST00000590060 1052 ntTSL 520.33■□□□□ 0.853e-6■■■■■ 103.4
SF3B1O75533 WDFY3-208ENST00000509172 453 ntTSL 320.28■□□□□ 0.841e-8■■■■■ 103.4
SF3B1O75533 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.832e-6■■■■■ 103.4
SF3B1O75533 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.826e-6■■■■■ 103.4
SF3B1O75533 PPOX-212ENST00000495483 2471 ntTSL 220.14■□□□□ 0.812e-12■■■■■ 103.4
SF3B1O75533 PIGG-216ENST00000508669 584 ntTSL 220.08■□□□□ 0.811e-8■■■■■ 103.4
SF3B1O75533 RFXANK-209ENST00000540981 832 ntTSL 520.08■□□□□ 0.811e-8■■■■■ 103.4
SF3B1O75533 TMEM120A-202ENST00000431867 872 ntTSL 520.06■□□□□ 0.86e-6■■■■■ 103.4
SF3B1O75533 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.81e-8■■■■■ 103.4
SF3B1O75533 TMEM120A-208ENST00000480538 668 ntTSL 220.03■□□□□ 0.86e-6■■■■■ 103.4
SF3B1O75533 XXYLT1-211ENST00000494175 565 ntTSL 420.02■□□□□ 0.81e-8■■■■■ 103.4
SF3B1O75533 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.02■□□□□ 0.796e-6■■■■■ 103.4
SF3B1O75533 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.791e-8■■■■■ 103.4
SF3B1O75533 AP2A2-212ENST00000528195 562 ntTSL 319.94■□□□□ 0.781e-8■■■■■ 103.4
SF3B1O75533 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.786e-6■■■■■ 103.4
SF3B1O75533 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.93■□□□□ 0.781e-8■■■■■ 103.4
SF3B1O75533 JMJD8-204ENST00000563088 1067 ntTSL 319.9■□□□□ 0.786e-6■■■■■ 103.4
SF3B1O75533 MPDU1-211ENST00000572936 1102 ntTSL 519.88■□□□□ 0.771e-8■■■■■ 103.4
SF3B1O75533 MPDU1-210ENST00000572836 1523 ntTSL 219.88■□□□□ 0.771e-8■■■■■ 103.4
SF3B1O75533 HS6ST1-204ENST00000494089 585 ntTSL 219.76■□□□□ 0.756e-6■■■■■ 103.4
SF3B1O75533 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.75■□□□□ 0.756e-6■■■■■ 103.4
SF3B1O75533 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.74■□□□□ 0.756e-6■■■■■ 103.4
SF3B1O75533 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.7■□□□□ 0.745e-6■■■■■ 103.4
SF3B1O75533 TMEM120A-204ENST00000440632 1352 ntTSL 519.69■□□□□ 0.746e-6■■■■■ 103.4
SF3B1O75533 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.69■□□□□ 0.742e-12■■■■■ 103.4
SF3B1O75533 CD151-207ENST00000525718 565 ntTSL 219.68■□□□□ 0.741e-8■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1133.8 ms