Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 RNU1-129P-201ENST00000384064 167 ntBASIC15.79■□□□□ 0.12
VPS4BO75351 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS4BO75351 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4BO75351 U1.21-201ENST00000580816 167 ntBASIC15.79■□□□□ 0.12
VPS4BO75351 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS4BO75351 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 AC010507.1-201ENST00000633895 436 ntBASIC15.79■□□□□ 0.12
VPS4BO75351 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4BO75351 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VPS4BO75351 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4BO75351 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4BO75351 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.78■□□□□ 0.12
VPS4BO75351 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
VPS4BO75351 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 HAUS4P1-201ENST00000406739 1145 ntBASIC15.78■□□□□ 0.12
VPS4BO75351 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4BO75351 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4BO75351 FAM185BP-201ENST00000443595 716 ntBASIC15.78■□□□□ 0.12
VPS4BO75351 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4BO75351 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4BO75351 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.78■□□□□ 0.12
VPS4BO75351 AC023141.13-201ENST00000604991 943 ntBASIC15.78■□□□□ 0.12
VPS4BO75351 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 AC091812.2-201ENST00000619081 385 ntBASIC15.78■□□□□ 0.12
VPS4BO75351 AL035252.4-201ENST00000624174 288 ntBASIC15.78■□□□□ 0.12
VPS4BO75351 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS4BO75351 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4BO75351 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4BO75351 MST1L-201ENST00000442552 2185 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
VPS4BO75351 AC025580.3-201ENST00000617932 1424 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS4BO75351 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VPS4BO75351 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms