Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL135744.1-201ENST00000565098 629 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC061975.2-201ENST00000581722 295 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC024267.1-201ENST00000582320 895 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 SPTSSB-204ENST00000617024 1292 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC091812.2-201ENST00000619081 385 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC008267.7-201ENST00000624570 1194 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC068418.2-201ENST00000577309 3703 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 AC126177.1-201ENST00000547829 2218 ntBASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HIF3AQ9Y2N7 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 FAM86C2P-203ENST00000528684 1004 ntBASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 TSPY26P-202ENST00000565928 3884 ntBASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
HIF3AQ9Y2N7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 AC134407.2-201ENST00000625089 1978 ntBASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 TFAMP1-201ENST00000412727 736 ntBASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 AL671277.1-201ENST00000429656 993 ntBASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 ADH5P3-201ENST00000433842 1137 ntBASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HIF3AQ9Y2N7 RN7SL589P-201ENST00000481268 310 ntBASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms