Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 NORAD-201ENST00000565493 5339 ntBASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AL592309.1-201ENST00000443127 649 ntBASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 LINC01225-203ENST00000563550 1244 ntBASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 CICP6-201ENST00000457191 2729 ntBASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 MIR3687-2-201ENST00000577708 61 ntBASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 MIR3687-1-201ENST00000614492 61 ntBASIC16.02■□□□□ 0.16
VPS9D1Q9Y2B5 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 UXT-AS1-201ENST00000590504 1525 ntBASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 AC008741.2-201ENST00000612792 3115 ntBASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS9D1Q9Y2B5 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS9D1Q9Y2B5 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms