Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 USP40-206ENST00000443711 628 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 GPR53P-205ENST00000457298 1084 ntBASIC17■□□□□ 0.31
PAAF1Q9BRP4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 AC104596.2-201ENST00000512793 793 ntBASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 AC036164.1-201ENST00000570544 333 ntBASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 AL162274.1-201ENST00000617191 1098 ntBASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PAAF1Q9BRP4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 TOMM22P5-201ENST00000416399 439 ntBASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 ACA64.2-201ENST00000459014 129 ntBASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 FAM86LP-201ENST00000478302 853 ntBASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 SLED1-202ENST00000512051 380 ntBASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 KRT17P8-201ENST00000540749 863 ntBASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.98■□□□□ 0.31
PAAF1Q9BRP4 AL359881.2-201ENST00000602973 570 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms