Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 PMS2P4-201ENST00000412466 1052 ntBASIC15.5■□□□□ 0.07
VPS33AQ96AX1 AC093724.1-201ENST00000448659 1027 ntBASIC15.5■□□□□ 0.07
VPS33AQ96AX1 CXCL1P1-201ENST00000502804 216 ntBASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS33AQ96AX1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AL161772.1-201ENST00000610494 4412 ntBASIC15.49■□□□□ 0.07
VPS33AQ96AX1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AL513480.1-201ENST00000451731 511 ntBASIC15.49■□□□□ 0.07
VPS33AQ96AX1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 AL109954.1-202ENST00000564051 2148 ntBASIC15.49■□□□□ 0.07
VPS33AQ96AX1 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VPS33AQ96AX1 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 AC138035.3-201ENST00000622706 2791 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 FAM197Y8-203ENST00000450145 560 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 AC018712.1-201ENST00000455767 687 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 MIR3909-201ENST00000579518 119 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 TMBIM7P-203ENST00000641617 1718 ntBASIC15.48■□□□□ 0.07
VPS33AQ96AX1 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS33AQ96AX1 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS33AQ96AX1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms