Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AP005117.1-201ENST00000584346 1413 ntBASIC14.41□□□□□ -0.1
SCN1BQ07699 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SCN1BQ07699 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.4□□□□□ -0.1
SCN1BQ07699 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SCN1BQ07699 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
SCN1BQ07699 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.4□□□□□ -0.1
SCN1BQ07699 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.4□□□□□ -0.1
SCN1BQ07699 AC013467.2-201ENST00000605472 835 ntBASIC14.4□□□□□ -0.1
SCN1BQ07699 AP001269.4-201ENST00000609611 512 ntBASIC14.4□□□□□ -0.1
SCN1BQ07699 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
SCN1BQ07699 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 AC232323.1-201ENST00000540724 2099 ntBASIC14.4□□□□□ -0.1
SCN1BQ07699 REXO1L5P-201ENST00000622260 2098 ntBASIC14.4□□□□□ -0.1
SCN1BQ07699 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SCN1BQ07699 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 CICP14-201ENST00000629111 2732 ntBASIC14.39□□□□□ -0.11
SCN1BQ07699 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SCN1BQ07699 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SCN1BQ07699 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SCN1BQ07699 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.39□□□□□ -0.11
SCN1BQ07699 MIR648-201ENST00000385046 94 ntBASIC14.39□□□□□ -0.11
SCN1BQ07699 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 POU5F1P6-201ENST00000466990 990 ntBASIC14.39□□□□□ -0.11
SCN1BQ07699 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SCN1BQ07699 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.39□□□□□ -0.11
SCN1BQ07699 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.39□□□□□ -0.11
SCN1BQ07699 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.39□□□□□ -0.11
SCN1BQ07699 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SCN1BQ07699 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.39□□□□□ -0.11
SCN1BQ07699 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SCN1BQ07699 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SCN1BQ07699 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SCN1BQ07699 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SCN1BQ07699 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.38□□□□□ -0.11
SCN1BQ07699 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SCN1BQ07699 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SCN1BQ07699 AC087481.3-201ENST00000602886 1894 ntBASIC14.38□□□□□ -0.11
SCN1BQ07699 AC006277.1-201ENST00000624348 1610 ntBASIC14.38□□□□□ -0.11
SCN1BQ07699 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.38□□□□□ -0.11
SCN1BQ07699 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms