Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.12■□□□□ 0.49
CCNA1P78396 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 YBX1P6-201ENST00000442962 1002 ntBASIC18.12■□□□□ 0.49
CCNA1P78396 AC012441.1-201ENST00000446669 685 ntBASIC18.12■□□□□ 0.49
CCNA1P78396 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.12■□□□□ 0.49
CCNA1P78396 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 CLUHP6-201ENST00000580789 941 ntBASIC18.12■□□□□ 0.49
CCNA1P78396 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.12■□□□□ 0.49
CCNA1P78396 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 AC134312.5-201ENST00000568031 1313 ntBASIC18.12■□□□□ 0.49
CCNA1P78396 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 UBALD1-205ENST00000590891 2641 ntBASIC18.12■□□□□ 0.49
CCNA1P78396 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.12■□□□□ 0.49
CCNA1P78396 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
CCNA1P78396 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.12■□□□□ 0.49
CCNA1P78396 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCNA1P78396 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCNA1P78396 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCNA1P78396 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNA1P78396 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNA1P78396 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNA1P78396 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNA1P78396 REXO1L1P-202ENST00000608646 1974 ntBASIC18.11■□□□□ 0.49
CCNA1P78396 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNA1P78396 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCNA1P78396 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNA1P78396 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNA1P78396 AC020907.1-201ENST00000616460 1350 ntBASIC18.1■□□□□ 0.49
CCNA1P78396 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms