Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.08□□□□□ -0.32
LMO4P61968 AL162726.2-201ENST00000438986 1017 ntBASIC13.08□□□□□ -0.32
LMO4P61968 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.08□□□□□ -0.32
LMO4P61968 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.08□□□□□ -0.32
LMO4P61968 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
LMO4P61968 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.08□□□□□ -0.32
LMO4P61968 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.08□□□□□ -0.32
LMO4P61968 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LMO4P61968 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.07□□□□□ -0.32
LMO4P61968 AC011477.6-201ENST00000604980 1927 ntBASIC13.07□□□□□ -0.32
LMO4P61968 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 MIR1909-201ENST00000411312 80 ntBASIC13.07□□□□□ -0.32
LMO4P61968 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.07□□□□□ -0.32
LMO4P61968 AL359711.2-201ENST00000563105 872 ntBASIC13.07□□□□□ -0.32
LMO4P61968 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 BTNL10-201ENST00000595971 695 ntBASIC13.07□□□□□ -0.32
LMO4P61968 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.07□□□□□ -0.32
LMO4P61968 MIR6805-201ENST00000615055 62 ntBASIC13.07□□□□□ -0.32
LMO4P61968 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 CU634019.7-201ENST00000624153 1185 ntBASIC13.07□□□□□ -0.32
LMO4P61968 FP236241.2-201ENST00000624906 1185 ntBASIC13.07□□□□□ -0.32
LMO4P61968 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 AC018892.3-201ENST00000623986 2499 ntBASIC13.07□□□□□ -0.32
LMO4P61968 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
LMO4P61968 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LMO4P61968 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LMO4P61968 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms