Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 SAPCD2P3-201ENST00000455031 850 ntBASIC14.21□□□□□ -0.13
SOX2P48431 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 IGHV3-65-201ENST00000523210 341 ntBASIC14.21□□□□□ -0.13
SOX2P48431 AF238378.1-201ENST00000526806 358 ntBASIC14.21□□□□□ -0.13
SOX2P48431 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 PRELID1P1-202ENST00000567272 903 ntBASIC14.21□□□□□ -0.13
SOX2P48431 AC021097.1-201ENST00000607902 574 ntBASIC14.21□□□□□ -0.13
SOX2P48431 MIR1199-201ENST00000621445 119 ntBASIC14.21□□□□□ -0.13
SOX2P48431 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.21□□□□□ -0.14
SOX2P48431 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
SOX2P48431 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.21□□□□□ -0.14
SOX2P48431 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.21□□□□□ -0.14
SOX2P48431 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.21□□□□□ -0.14
SOX2P48431 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX2P48431 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 RNU1-129P-201ENST00000384064 167 ntBASIC14.2□□□□□ -0.14
SOX2P48431 MRPL20P1-201ENST00000400819 433 ntBASIC14.2□□□□□ -0.14
SOX2P48431 HAUS4P1-201ENST00000406739 1145 ntBASIC14.2□□□□□ -0.14
SOX2P48431 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX2P48431 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX2P48431 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.2□□□□□ -0.14
SOX2P48431 U1.21-201ENST00000580816 167 ntBASIC14.2□□□□□ -0.14
SOX2P48431 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.2□□□□□ -0.14
SOX2P48431 LINC01711-201ENST00000598340 967 ntBASIC14.2□□□□□ -0.14
SOX2P48431 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 AL031055.1-201ENST00000606362 631 ntBASIC14.2□□□□□ -0.14
SOX2P48431 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.2□□□□□ -0.14
SOX2P48431 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SOX2P48431 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX2P48431 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
SOX2P48431 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms