Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.65■□□□□ 0.26
PTPN9P43378 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.65■□□□□ 0.26
PTPN9P43378 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.65■□□□□ 0.26
PTPN9P43378 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.65■□□□□ 0.26
PTPN9P43378 MIR4313-201ENST00000580760 101 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.65■□□□□ 0.26
PTPN9P43378 AL589739.1-201ENST00000607720 493 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.65■□□□□ 0.26
PTPN9P43378 AC093028.1-201ENST00000622998 982 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 KRT18P28-201ENST00000453838 1332 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.64■□□□□ 0.26
PTPN9P43378 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
PTPN9P43378 AC105917.1-201ENST00000506637 2539 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.64■□□□□ 0.25
PTPN9P43378 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
PTPN9P43378 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 KLF2P3-201ENST00000451977 1087 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 HLA-V-204ENST00000476601 1289 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 AC067863.1-201ENST00000494933 530 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 HNRNPUP1-201ENST00000554987 333 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.64■□□□□ 0.25
PTPN9P43378 GPALPP1-207ENST00000611650 899 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.64■□□□□ 0.25
PTPN9P43378 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.64■□□□□ 0.25
PTPN9P43378 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PTPN9P43378 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTPN9P43378 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN9P43378 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.63■□□□□ 0.25
PTPN9P43378 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.63■□□□□ 0.25
PTPN9P43378 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
PTPN9P43378 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN9P43378 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.63■□□□□ 0.25
PTPN9P43378 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTPN9P43378 AC136604.1-201ENST00000418535 575 ntBASIC16.63■□□□□ 0.25
PTPN9P43378 METTL21AP1-201ENST00000438852 635 ntBASIC16.63■□□□□ 0.25
PTPN9P43378 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.63■□□□□ 0.25
PTPN9P43378 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.63■□□□□ 0.25
PTPN9P43378 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN9P43378 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms