Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.75■□□□□ 0.75
COL5A3P25940 MIR4313-201ENST00000580760 101 ntBASIC19.75■□□□□ 0.75
COL5A3P25940 RN7SL713P-201ENST00000582127 302 ntBASIC19.75■□□□□ 0.75
COL5A3P25940 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.75■□□□□ 0.75
COL5A3P25940 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.75■□□□□ 0.75
COL5A3P25940 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL5A3P25940 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.75■□□□□ 0.75
COL5A3P25940 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.75■□□□□ 0.75
COL5A3P25940 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL5A3P25940 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A3P25940 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A3P25940 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL5A3P25940 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.74■□□□□ 0.75
COL5A3P25940 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL5A3P25940 RN7SL48P-201ENST00000579283 293 ntBASIC19.74■□□□□ 0.75
COL5A3P25940 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A3P25940 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL5A3P25940 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC19.74■□□□□ 0.75
COL5A3P25940 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.74■□□□□ 0.75
COL5A3P25940 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL5A3P25940 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A3P25940 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 HINT2P1-201ENST00000419438 481 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.73■□□□□ 0.75
COL5A3P25940 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.73■□□□□ 0.75
COL5A3P25940 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
COL5A3P25940 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 AP001505.2-201ENST00000616815 443 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 PRSS30P-206ENST00000641773 873 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
COL5A3P25940 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 AC016700.1-201ENST00000429424 312 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.73■□□□□ 0.75
COL5A3P25940 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.73■□□□□ 0.75
COL5A3P25940 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 AL391280.1-201ENST00000506969 1062 ntBASIC19.73■□□□□ 0.75
COL5A3P25940 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.73■□□□□ 0.75
COL5A3P25940 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.73■□□□□ 0.75
COL5A3P25940 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A3P25940 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 AC011477.6-201ENST00000604980 1927 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 FLJ38576-201ENST00000623820 2459 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
COL5A3P25940 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms