Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 COPE-203ENST00000351079 907 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.52□□□□□ -0.41
CXCL1P09341 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.52□□□□□ -0.41
CXCL1P09341 ACTG1P4-201ENST00000425123 1122 ntBASIC12.52□□□□□ -0.41
CXCL1P09341 BX664615.1-201ENST00000443558 458 ntBASIC12.52□□□□□ -0.41
CXCL1P09341 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.52□□□□□ -0.41
CXCL1P09341 TSPY15P-201ENST00000457163 923 ntBASIC12.52□□□□□ -0.41
CXCL1P09341 SNX5-210ENST00000481323 562 ntTSL 3 BASIC12.52□□□□□ -0.41
CXCL1P09341 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.52□□□□□ -0.41
CXCL1P09341 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC12.52□□□□□ -0.41
CXCL1P09341 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 AL139385.1-201ENST00000611744 3272 ntBASIC12.52□□□□□ -0.41
CXCL1P09341 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AC006277.1-201ENST00000624348 1610 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.51□□□□□ -0.41
CXCL1P09341 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 HSPA7-201ENST00000445535 1927 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 AC118758.2-201ENST00000614242 2813 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CXCL1P09341 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC12.51□□□□□ -0.41
CXCL1P09341 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 RN7SL606P-201ENST00000472779 293 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CXCL1P09341 AC009533.2-201ENST00000543664 586 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 DUT-205ENST00000558813 769 ntTSL 2 BASIC12.51□□□□□ -0.41
CXCL1P09341 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 AC011558.1-201ENST00000623459 338 ntBASIC12.51□□□□□ -0.41
CXCL1P09341 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.51□□□□□ -0.41
CXCL1P09341 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CXCL1P09341 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CXCL1P09341 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms