Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 AL596087.1-201ENST00000400979 1969 ntBASIC19.25■□□□□ 0.67
COL4A1P02462 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A1P02462 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A1P02462 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 FAM197Y7-201ENST00000432892 766 ntBASIC19.25■□□□□ 0.67
COL4A1P02462 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 FAM8A2P-201ENST00000528813 1142 ntBASIC19.25■□□□□ 0.67
COL4A1P02462 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 AC020907.1-201ENST00000616460 1350 ntBASIC19.25■□□□□ 0.67
COL4A1P02462 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A1P02462 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL4A1P02462 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A1P02462 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 AC011477.6-201ENST00000604980 1927 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A1P02462 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL4A1P02462 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 AC007969.1-201ENST00000433675 447 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A1P02462 AP003171.2-201ENST00000528208 925 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL4A1P02462 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A1P02462 RN7SL560P-201ENST00000577943 264 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A1P02462 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 AC243960.2-201ENST00000600996 747 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 AC005695.3-201ENST00000614522 232 ntBASIC19.24■□□□□ 0.67
COL4A1P02462 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A1P02462 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A1P02462 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A1P02462 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.23■□□□□ 0.67
COL4A1P02462 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 AC009090.5-201ENST00000624886 2285 ntBASIC19.23■□□□□ 0.67
COL4A1P02462 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A1P02462 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A1P02462 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A1P02462 BCYRN1-201ENST00000418539 200 ntBASIC19.23■□□□□ 0.67
COL4A1P02462 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms