Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PAUPAR-201ENST00000630360 2965 ntBASIC15.46■□□□□ 0.07
SEMA3DO95025 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.46■□□□□ 0.07
SEMA3DO95025 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SEMA3DO95025 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.46■□□□□ 0.07
SEMA3DO95025 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.46■□□□□ 0.07
SEMA3DO95025 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.46■□□□□ 0.06
SEMA3DO95025 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.46■□□□□ 0.06
SEMA3DO95025 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
SEMA3DO95025 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
SEMA3DO95025 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 AC011477.6-201ENST00000604980 1927 ntBASIC15.45■□□□□ 0.06
SEMA3DO95025 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 AC010491.1-201ENST00000563101 2797 ntBASIC15.45■□□□□ 0.06
SEMA3DO95025 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 TIMM8BP1-201ENST00000452384 211 ntBASIC15.45■□□□□ 0.06
SEMA3DO95025 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.45■□□□□ 0.06
SEMA3DO95025 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.45■□□□□ 0.06
SEMA3DO95025 IGHV3-62-201ENST00000520057 340 ntBASIC15.45■□□□□ 0.06
SEMA3DO95025 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.45■□□□□ 0.06
SEMA3DO95025 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.45■□□□□ 0.06
SEMA3DO95025 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SEMA3DO95025 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.45■□□□□ 0.06
SEMA3DO95025 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
SEMA3DO95025 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SEMA3DO95025 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.44■□□□□ 0.06
SEMA3DO95025 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
SEMA3DO95025 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 HLA-H-201ENST00000383620 1096 ntBASIC15.44■□□□□ 0.06
SEMA3DO95025 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 YBX1P5-201ENST00000509441 847 ntBASIC15.44■□□□□ 0.06
SEMA3DO95025 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.44■□□□□ 0.06
SEMA3DO95025 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 AC005829.1-201ENST00000570002 483 ntBASIC15.44■□□□□ 0.06
SEMA3DO95025 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
SEMA3DO95025 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.44■□□□□ 0.06
SEMA3DO95025 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.44■□□□□ 0.06
SEMA3DO95025 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.44■□□□□ 0.06
SEMA3DO95025 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SEMA3DO95025 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.44■□□□□ 0.06
SEMA3DO95025 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SEMA3DO95025 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.43■□□□□ 0.06
SEMA3DO95025 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms