Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.12■□□□□ 0.01
LDB3O75112 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 AL645939.2-201ENST00000427340 991 ntBASIC15.12■□□□□ 0.01
LDB3O75112 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 AP001282.1-201ENST00000531301 1499 ntBASIC15.12■□□□□ 0.01
LDB3O75112 AC112504.1-201ENST00000623415 1841 ntBASIC15.12■□□□□ 0.01
LDB3O75112 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.12■□□□□ 0.01
LDB3O75112 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 BNIP3P1-202ENST00000550043 1585 ntBASIC15.11■□□□□ 0.01
LDB3O75112 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LDB3O75112 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.11■□□□□ 0.01
LDB3O75112 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LDB3O75112 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 AC067863.1-201ENST00000494933 530 ntBASIC15.11■□□□□ 0.01
LDB3O75112 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.11■□□□□ 0.01
LDB3O75112 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.11■□□□□ 0.01
LDB3O75112 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.11■□□□□ 0.01
LDB3O75112 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.11■□□□□ 0.01
LDB3O75112 AC051619.7-201ENST00000568314 623 ntBASIC15.11■□□□□ 0.01
LDB3O75112 AC015911.4-201ENST00000588022 1070 ntBASIC15.11■□□□□ 0.01
LDB3O75112 AL133215.2-201ENST00000609242 977 ntBASIC15.11■□□□□ 0.01
LDB3O75112 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LDB3O75112 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.11■□□□□ 0.01
LDB3O75112 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LDB3O75112 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDB3O75112 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms