Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13□□□□□ -0.33
HMGB3O15347 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 GRHL2-201ENST00000251808 5239 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 AP002414.1-201ENST00000391405 1147 ntBASIC13□□□□□ -0.33
HMGB3O15347 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 AC011840.4-201ENST00000578471 627 ntBASIC13□□□□□ -0.33
HMGB3O15347 AL592071.1-201ENST00000611956 408 ntBASIC13□□□□□ -0.33
HMGB3O15347 AD001527.2-201ENST00000622994 785 ntBASIC13□□□□□ -0.33
HMGB3O15347 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 AL031708.1-201ENST00000454337 5326 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 AC023908.3-201ENST00000564211 3047 ntBASIC13□□□□□ -0.33
HMGB3O15347 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13□□□□□ -0.33
HMGB3O15347 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 MYH3-205ENST00000583535 6037 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HMGB3O15347 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13□□□□□ -0.33
HMGB3O15347 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HMGB3O15347 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.99□□□□□ -0.33
HMGB3O15347 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 CICP24-201ENST00000605464 2705 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 FAN1-201ENST00000362065 4891 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HMGB3O15347 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 AL845331.1-201ENST00000424978 1190 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC12.99□□□□□ -0.33
HMGB3O15347 KRT18P38-201ENST00000449496 1282 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.99□□□□□ -0.33
HMGB3O15347 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
HMGB3O15347 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC12.99□□□□□ -0.33
HMGB3O15347 AC010203.1-204ENST00000548782 407 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.99□□□□□ -0.33
HMGB3O15347 AC139887.4-201ENST00000607877 719 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 WDR6-223ENST00000627177 207 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.99□□□□□ -0.33
HMGB3O15347 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.99□□□□□ -0.33
HMGB3O15347 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
HMGB3O15347 AC069224.1-201ENST00000566372 1715 ntBASIC12.99□□□□□ -0.33
HMGB3O15347 PLB1-201ENST00000327757 5107 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms