Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.5■□□□□ 0.07
SLC28A1O00337 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.5■□□□□ 0.07
SLC28A1O00337 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.5■□□□□ 0.07
SLC28A1O00337 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 RARRES2P8-201ENST00000566335 367 ntBASIC15.5■□□□□ 0.07
SLC28A1O00337 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.5■□□□□ 0.07
SLC28A1O00337 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 SPTSSB-204ENST00000617024 1292 ntBASIC15.5■□□□□ 0.07
SLC28A1O00337 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SLC28A1O00337 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.5■□□□□ 0.07
SLC28A1O00337 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.49■□□□□ 0.07
SLC28A1O00337 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SLC28A1O00337 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SLC28A1O00337 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SLC28A1O00337 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.49■□□□□ 0.07
SLC28A1O00337 AC105233.2-201ENST00000523697 349 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 AF228730.5-201ENST00000530288 346 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.49■□□□□ 0.07
SLC28A1O00337 AC243562.2-201ENST00000561247 970 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.49■□□□□ 0.07
SLC28A1O00337 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.49■□□□□ 0.07
SLC28A1O00337 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.49■□□□□ 0.07
SLC28A1O00337 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SLC28A1O00337 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
SLC28A1O00337 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SLC28A1O00337 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SLC28A1O00337 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SLC28A1O00337 AC092850.2-201ENST00000623821 2697 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 ZNF259P1-201ENST00000407656 1365 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.49■□□□□ 0.07
SLC28A1O00337 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SLC28A1O00337 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
SLC28A1O00337 AC087481.3-201ENST00000602886 1894 ntBASIC15.48■□□□□ 0.07
SLC28A1O00337 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SLC28A1O00337 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
SLC28A1O00337 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms