Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 UROS-201ENST00000368774 744 ntTSL 2 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 HNRNPA1P41-201ENST00000397777 928 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 AP002803.1-201ENST00000528836 498 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 MIR4321-201ENST00000592276 80 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 AL023803.2-201ENST00000620080 638 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC136604.1-201ENST00000418535 575 ntBASIC12.19□□□□□ -0.46
COL6A5A8TX70 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC244250.3-201ENST00000620749 366 ntBASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 SLED1-202ENST00000512051 380 ntBASIC12.19□□□□□ -0.46
COL6A5A8TX70 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 RN7SL713P-201ENST00000582127 302 ntBASIC12.19□□□□□ -0.46
COL6A5A8TX70 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.19□□□□□ -0.46
COL6A5A8TX70 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL6A5A8TX70 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 EML3-217ENST00000531557 2509 ntTSL 5 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
COL6A5A8TX70 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
COL6A5A8TX70 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms