Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHMP1AQ9HD42 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 AC005412.3-201ENST00000580309 715 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 REXO1L8P-201ENST00000604378 1897 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 AL445228.2-201ENST00000605589 952 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CICP14-201ENST00000629111 2732 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CHMP1AQ9HD42 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 LAGE3P1-201ENST00000425356 484 ntBASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 GGTLC5P-201ENST00000617623 998 ntBASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 AL009178.2-201ENST00000597278 2719 ntBASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.93□□□□□ -0.18
CHMP1AQ9HD42 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms