Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
PCGF1Q9BSM1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NORAD-201ENST00000565493 5339 ntBASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AL138918.1-201ENST00000568306 659 ntBASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AC093512.1-201ENST00000617969 520 ntBASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 Z92544.3-201ENST00000624747 417 ntBASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCGF1Q9BSM1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 CNN2P2-201ENST00000443536 909 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 CNN2P3-201ENST00000450201 906 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 PRYP6-201ENST00000514804 343 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 LINC01225-203ENST00000563550 1244 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 AP000842.3-202ENST00000569238 1080 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 AL136317.3-201ENST00000618497 906 ntBASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
PCGF1Q9BSM1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms