Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 CYMP-203ENST00000474680 1263 ntBASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AL450472.2-201ENST00000603663 1156 ntBASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 AC008741.2-201ENST00000612792 3115 ntBASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ZIC4Q8N9L1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 AL590560.3-201ENST00000623350 461 ntBASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 AL033527.5-202ENST00000641632 1098 ntBASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ZIC4Q8N9L1 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC100757.3-201ENST00000622361 1406 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms