Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC88AQ3V6T2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AP001258.2-201ENST00000529891 490 ntBASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 MIR3619-201ENST00000579667 83 ntBASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 AC128714.1-201ENST00000637035 887 ntBASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC88AQ3V6T2 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 AL662890.1-201ENST00000396818 632 ntBASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 AC074338.1-201ENST00000416825 156 ntBASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC88AQ3V6T2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AHCYP2-201ENST00000430630 1300 ntBASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AC004898.1-201ENST00000451057 766 ntBASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AP006547.1-201ENST00000563435 692 ntBASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AP001063.1-201ENST00000568332 529 ntBASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 MIR5572-201ENST00000583188 137 ntBASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms