Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 AC105020.1-201ENST00000435356 2205 ntBASIC15.49■□□□□ 0.07
COL28A1Q2UY09 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 AC108725.1-201ENST00000495472 409 ntBASIC15.48■□□□□ 0.07
COL28A1Q2UY09 AC123567.1-201ENST00000548294 1261 ntBASIC15.48■□□□□ 0.07
COL28A1Q2UY09 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 MIR3615-201ENST00000581999 87 ntBASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL28A1Q2UY09 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TUBB1P2-201ENST00000422712 1306 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TUBB1P1-201ENST00000503144 1300 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 HLA-H-201ENST00000383620 1096 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 KRT43P-201ENST00000434019 910 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 RN7SL618P-201ENST00000477850 296 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 ZNF890P-202ENST00000530367 1156 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC006538.1-201ENST00000567905 1585 ntBASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 KRT8P49-201ENST00000604166 1432 ntBASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms