Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.53■□□□□ 0.08
PCDH1Q08174 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
PCDH1Q08174 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDH1Q08174 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDH1Q08174 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.53■□□□□ 0.08
PCDH1Q08174 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.53■□□□□ 0.08
PCDH1Q08174 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
PCDH1Q08174 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDH1Q08174 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
PCDH1Q08174 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDH1Q08174 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDH1Q08174 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDH1Q08174 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PCDH1Q08174 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
PCDH1Q08174 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PCDH1Q08174 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.52■□□□□ 0.08
PCDH1Q08174 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.52■□□□□ 0.08
PCDH1Q08174 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PCDH1Q08174 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PCDH1Q08174 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PCDH1Q08174 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCDH1Q08174 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PCDH1Q08174 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.52■□□□□ 0.08
PCDH1Q08174 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.52■□□□□ 0.08
PCDH1Q08174 TIMM8BP1-201ENST00000452384 211 ntBASIC15.52■□□□□ 0.08
PCDH1Q08174 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.52■□□□□ 0.08
PCDH1Q08174 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.52■□□□□ 0.08
PCDH1Q08174 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.52■□□□□ 0.08
PCDH1Q08174 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.52■□□□□ 0.08
PCDH1Q08174 SLC25A39P2-201ENST00000537614 270 ntBASIC15.52■□□□□ 0.08
PCDH1Q08174 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
PCDH1Q08174 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PCDH1Q08174 AP3S2-216ENST00000617003 1561 ntBASIC15.52■□□□□ 0.07
PCDH1Q08174 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.52■□□□□ 0.07
PCDH1Q08174 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.52■□□□□ 0.07
PCDH1Q08174 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.52■□□□□ 0.07
PCDH1Q08174 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PCDH1Q08174 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.07
PCDH1Q08174 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.52■□□□□ 0.07
PCDH1Q08174 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCDH1Q08174 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PCDH1Q08174 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.52■□□□□ 0.07
PCDH1Q08174 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PCDH1Q08174 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PCDH1Q08174 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDH1Q08174 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PCDH1Q08174 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PCDH1Q08174 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PCDH1Q08174 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PCDH1Q08174 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDH1Q08174 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
PCDH1Q08174 CEND1P1-201ENST00000451006 455 ntBASIC15.51■□□□□ 0.07
PCDH1Q08174 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.51■□□□□ 0.07
PCDH1Q08174 RNA5SP410-201ENST00000516285 106 ntBASIC15.51■□□□□ 0.07
PCDH1Q08174 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms