Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLDN6P56747 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLDN6P56747 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 AC005622.1-201ENST00000636801 1703 ntBASIC15.38■□□□□ 0.05
CLDN6P56747 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.38■□□□□ 0.05
CLDN6P56747 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 CSF2RBP1-201ENST00000447905 391 ntBASIC15.38■□□□□ 0.05
CLDN6P56747 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.38■□□□□ 0.05
CLDN6P56747 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.38■□□□□ 0.05
CLDN6P56747 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CLDN6P56747 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CLDN6P56747 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 AC084018.2-201ENST00000613093 2607 ntBASIC15.38■□□□□ 0.05
CLDN6P56747 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
CLDN6P56747 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CLDN6P56747 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLDN6P56747 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.38■□□□□ 0.05
CLDN6P56747 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 U82695.1-201ENST00000635752 1889 ntBASIC15.37■□□□□ 0.05
CLDN6P56747 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLDN6P56747 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 AL355994.2-201ENST00000447882 704 ntBASIC15.37■□□□□ 0.05
CLDN6P56747 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.37■□□□□ 0.05
CLDN6P56747 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.37■□□□□ 0.05
CLDN6P56747 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.37■□□□□ 0.05
CLDN6P56747 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLDN6P56747 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.37■□□□□ 0.05
CLDN6P56747 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.37■□□□□ 0.05
CLDN6P56747 AL391069.4-201ENST00000609583 481 ntBASIC15.37■□□□□ 0.05
CLDN6P56747 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.37■□□□□ 0.05
CLDN6P56747 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLDN6P56747 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLDN6P56747 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLDN6P56747 AC124067.4-201ENST00000519691 2379 ntBASIC15.36■□□□□ 0.05
CLDN6P56747 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLDN6P56747 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLDN6P56747 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLDN6P56747 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms