Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TM4SF4P48230 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TM4SF4P48230 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 NUP210P1-202ENST00000504322 710 ntBASIC17.98■□□□□ 0.47
TM4SF4P48230 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.98■□□□□ 0.47
TM4SF4P48230 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 AP000346.4-201ENST00000614827 381 ntBASIC17.98■□□□□ 0.47
TM4SF4P48230 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.98■□□□□ 0.47
TM4SF4P48230 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TM4SF4P48230 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 AC134407.2-201ENST00000625089 1978 ntBASIC17.97■□□□□ 0.47
TM4SF4P48230 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TM4SF4P48230 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.97■□□□□ 0.47
TM4SF4P48230 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.97■□□□□ 0.47
TM4SF4P48230 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.97■□□□□ 0.47
TM4SF4P48230 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.97■□□□□ 0.47
TM4SF4P48230 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 HLA-C-210ENST00000640219 976 ntBASIC17.97■□□□□ 0.47
TM4SF4P48230 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.97■□□□□ 0.47
TM4SF4P48230 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.97■□□□□ 0.47
TM4SF4P48230 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TM4SF4P48230 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TM4SF4P48230 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC007274.2-201ENST00000421675 662 ntBASIC17.96■□□□□ 0.47
TM4SF4P48230 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.96■□□□□ 0.47
TM4SF4P48230 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.96■□□□□ 0.47
TM4SF4P48230 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.96■□□□□ 0.47
TM4SF4P48230 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TM4SF4P48230 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.96■□□□□ 0.47
TM4SF4P48230 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
TM4SF4P48230 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TM4SF4P48230 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.96■□□□□ 0.47
TM4SF4P48230 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TM4SF4P48230 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TM4SF4P48230 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TM4SF4P48230 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.95■□□□□ 0.46
TM4SF4P48230 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TM4SF4P48230 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.95■□□□□ 0.46
TM4SF4P48230 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TM4SF4P48230 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TM4SF4P48230 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms