Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.32■□□□□ 0.2
HADHAP40939 TIMM8BP1-201ENST00000452384 211 ntBASIC16.32■□□□□ 0.2
HADHAP40939 AC098859.1-201ENST00000502915 1238 ntBASIC16.32■□□□□ 0.2
HADHAP40939 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HADHAP40939 AC079140.1-201ENST00000508039 487 ntBASIC16.32■□□□□ 0.2
HADHAP40939 AC104640.1-201ENST00000562617 2109 ntBASIC16.32■□□□□ 0.2
HADHAP40939 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HADHAP40939 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.32■□□□□ 0.2
HADHAP40939 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.32■□□□□ 0.2
HADHAP40939 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 AC022532.1-201ENST00000624563 1728 ntBASIC16.32■□□□□ 0.2
HADHAP40939 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.32■□□□□ 0.2
HADHAP40939 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HADHAP40939 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HADHAP40939 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.31■□□□□ 0.2
HADHAP40939 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.31■□□□□ 0.2
HADHAP40939 KRT8P48-201ENST00000515599 1220 ntBASIC16.31■□□□□ 0.2
HADHAP40939 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.31■□□□□ 0.2
HADHAP40939 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.31■□□□□ 0.2
HADHAP40939 AL138918.1-201ENST00000568306 659 ntBASIC16.31■□□□□ 0.2
HADHAP40939 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HADHAP40939 SPTSSB-204ENST00000617024 1292 ntBASIC16.31■□□□□ 0.2
HADHAP40939 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.31■□□□□ 0.2
HADHAP40939 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.31■□□□□ 0.2
HADHAP40939 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HADHAP40939 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HADHAP40939 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HADHAP40939 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 MIR600HG-201ENST00000449175 5984 ntBASIC16.3■□□□□ 0.2
HADHAP40939 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.3■□□□□ 0.2
HADHAP40939 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.3■□□□□ 0.2
HADHAP40939 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.3■□□□□ 0.2
HADHAP40939 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HADHAP40939 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
HADHAP40939 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HADHAP40939 RPSAP43-201ENST00000402237 625 ntBASIC16.3■□□□□ 0.2
HADHAP40939 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.3■□□□□ 0.2
HADHAP40939 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.3■□□□□ 0.2
HADHAP40939 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.3■□□□□ 0.2
HADHAP40939 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HADHAP40939 SPCS2P4-201ENST00000436160 681 ntBASIC16.3■□□□□ 0.2
HADHAP40939 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.3■□□□□ 0.2
HADHAP40939 AC245100.5-201ENST00000452108 331 ntBASIC16.3■□□□□ 0.2
HADHAP40939 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms