Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RBBP7-209ENST00000468092 630 ntTSL 524.09■■□□□ 1.455e-9■□□□□ 10.8
YBX3P16989 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.432e-10■□□□□ 10.7
YBX3P16989 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.192e-10■□□□□ 10.7
YBX3P16989 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.972e-10■□□□□ 10.7
YBX3P16989 NUTF2-204ENST00000568390 593 ntTSL 320.8■□□□□ 0.922e-10■□□□□ 10.7
YBX3P16989 NUTF2-202ENST00000567105 582 ntTSL 318.96■□□□□ 0.632e-10■□□□□ 10.7
YBX3P16989 NUTF2-203ENST00000568233 589 ntTSL 216.84■□□□□ 0.292e-10■□□□□ 10.7
YBX3P16989 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.053e-11■□□□□ 10.7
YBX3P16989 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.993e-11■□□□□ 10.7
YBX3P16989 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.693e-11■□□□□ 10.7
YBX3P16989 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.653e-11■□□□□ 10.7
YBX3P16989 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.36■□□□□ 0.373e-11■□□□□ 10.7
YBX3P16989 E2F6-205ENST00000437573 1253 ntTSL 1 (best)29.15■■■□□ 2.263e-6■□□□□ 10.7
YBX3P16989 E2F6-208ENST00000468775 1061 ntTSL 229.15■■■□□ 2.263e-6■□□□□ 10.7
YBX3P16989 E2F6-210ENST00000498701 610 ntTSL 428.11■■■□□ 2.093e-6■□□□□ 10.7
YBX3P16989 E2F6-203ENST00000421117 907 ntTSL 526.12■■□□□ 1.773e-6■□□□□ 10.7
YBX3P16989 E2F6-204ENST00000428221 3139 ntTSL 1 (best)16.65■□□□□ 0.263e-6■□□□□ 10.7
YBX3P16989 E2F6-206ENST00000444832 3296 ntTSL 1 (best)15.79■□□□□ 0.123e-6■□□□□ 10.7
YBX3P16989 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.74■□□□□ 0.113e-6■□□□□ 10.7
YBX3P16989 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.69■□□□□ 0.13e-6■□□□□ 10.7
YBX3P16989 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.61■□□□□ 0.093e-6■□□□□ 10.7
YBX3P16989 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.073e-6■□□□□ 10.7
YBX3P16989 E2F6-207ENST00000455198 2227 ntTSL 1 (best)11.7□□□□□ -0.543e-6■□□□□ 10.7
YBX3P16989 AP002990.1-201ENST00000526409 1954 ntTSL 521.12■□□□□ 0.977e-50■□□□□ 10.7
YBX3P16989 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.277e-50■□□□□ 10.7
YBX3P16989 EEF1G-203ENST00000525340 2496 ntTSL 1 (best)15.66■□□□□ 0.17e-50■□□□□ 10.7
YBX3P16989 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.037e-50■□□□□ 10.7
YBX3P16989 SPG11-212ENST00000558790 858 ntTSL 313.81□□□□□ -0.21e-6■□□□□ 10.7
YBX3P16989 SPG11-209ENST00000558253 879 ntTSL 38.61□□□□□ -1.031e-6■□□□□ 10.7
YBX3P16989 SRP72-203ENST00000505314 1071 ntTSL 37.59□□□□□ -1.191e-6■□□□□ 10.7
YBX3P16989 SPG11-208ENST00000558155 571 ntTSL 57.41□□□□□ -1.221e-6■□□□□ 10.7
YBX3P16989 SPG11-223ENST00000560858 447 ntTSL 55.01□□□□□ -1.611e-6■□□□□ 10.7
YBX3P16989 GNAS-225ENST00000467227 543 ntTSL 38.53□□□□□ -1.042e-7■□□□□ 10.7
YBX3P16989 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.025e-76■□□□□ 10.7
YBX3P16989 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.865e-76■□□□□ 10.7
YBX3P16989 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.365e-76■□□□□ 10.7
YBX3P16989 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.355e-76■□□□□ 10.7
YBX3P16989 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.265e-76■□□□□ 10.7
YBX3P16989 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.215e-76■□□□□ 10.7
YBX3P16989 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.08■□□□□ 0.175e-76■□□□□ 10.7
YBX3P16989 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.07■□□□□ 05e-76■□□□□ 10.7
YBX3P16989 ALDOA-211ENST00000564521 2534 ntTSL 513.5□□□□□ -0.255e-76■□□□□ 10.7
YBX3P16989 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.85■■■■□ 3.171e-11■□□□□ 10.7
YBX3P16989 REPIN1-213ENST00000488943 1262 ntTSL 528.88■■■□□ 2.211e-11■□□□□ 10.7
YBX3P16989 REPIN1-208ENST00000475514 1192 ntTSL 528.44■■■□□ 2.141e-11■□□□□ 10.7
YBX3P16989 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC26.02■■□□□ 1.761e-11■□□□□ 10.7
YBX3P16989 REPIN1-218ENST00000519397 583 ntTSL 421.77■■□□□ 1.081e-11■□□□□ 10.7
YBX3P16989 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.071e-7■□□□□ 10.7
YBX3P16989 CAPRIN1-201ENST00000341394 4108 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.581e-7■□□□□ 10.7
YBX3P16989 NDUFB4-204ENST00000491335 558 ntTSL 224.24■■□□□ 1.472e-15■□□□□ 10.7
YBX3P16989 NDUFB4-202ENST00000461682 821 ntTSL 319.84■□□□□ 0.772e-15■□□□□ 10.7
YBX3P16989 NDUFB4-203ENST00000485064 1426 ntTSL 1 (best) BASIC14.17□□□□□ -0.142e-15■□□□□ 10.7
YBX3P16989 NDUFB4-205ENST00000492739 309 ntTSL 2 BASIC11.63□□□□□ -0.552e-15■□□□□ 10.7
YBX3P16989 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.892e-15■□□□□ 10.7
YBX3P16989 PNPLA2-205ENST00000531923 637 ntTSL 230.45■■■□□ 2.477e-10■□□□□ 10.7
YBX3P16989 PNPLA2-202ENST00000525250 2726 ntTSL 220.17■□□□□ 0.827e-10■□□□□ 10.7
YBX3P16989 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.687e-10■□□□□ 10.7
YBX3P16989 QARS-221ENST00000494767 1023 ntTSL 516.95■□□□□ 0.35e-9■□□□□ 10.7
YBX3P16989 QARS-206ENST00000452739 1044 ntTSL 514.93□□□□□ -0.025e-9■□□□□ 10.7
YBX3P16989 QARS-213ENST00000470619 876 ntTSL 414.75□□□□□ -0.055e-9■□□□□ 10.7
YBX3P16989 QARS-244ENST00000635501 1290 ntTSL 214.39□□□□□ -0.115e-9■□□□□ 10.7
YBX3P16989 RPS28-202ENST00000449223 1523 ntTSL 223.1■■□□□ 1.297e-19■□□□□ 10.7
YBX3P16989 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.887e-19■□□□□ 10.7
YBX3P16989 RPS28-204ENST00000602140 912 ntTSL 1 (best)18.03■□□□□ 0.487e-19■□□□□ 10.7
YBX3P16989 PLEKHM2-204ENST00000477849 1057 ntTSL 520.92■□□□□ 0.941e-6■□□□□ 10.7
YBX3P16989 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.821e-6■□□□□ 10.7
YBX3P16989 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.51e-6■□□□□ 10.7
YBX3P16989 SEPT2-211ENST00000421717 818 ntTSL 424.32■■□□□ 1.482e-10■□□□□ 10.7
YBX3P16989 SEPT2-223ENST00000451310 801 ntTSL 220.76■□□□□ 0.912e-10■□□□□ 10.7
YBX3P16989 EIF4G2-230ENST00000534470 520 ntTSL 25.75□□□□□ -1.495e-16■□□□□ 10.7
YBX3P16989 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.85■■■□□ 2.698e-11■□□□□ 10.7
YBX3P16989 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC29.62■■■□□ 2.338e-11■□□□□ 10.7
YBX3P16989 TPI1-202ENST00000396705 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.128e-11■□□□□ 10.7
YBX3P16989 TPI1-209ENST00000535434 1587 ntTSL 2 BASIC14.13□□□□□ -0.158e-11■□□□□ 10.7
YBX3P16989 RACK1-232ENST00000514318 581 ntTSL 322.43■■□□□ 1.182e-60■□□□□ 10.7
YBX3P16989 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.422e-10■□□□□ 10.7
YBX3P16989 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.94■□□□□ 0.142e-10■□□□□ 10.7
YBX3P16989 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.112e-10■□□□□ 10.7
YBX3P16989 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.76■□□□□ 0.112e-10■□□□□ 10.7
YBX3P16989 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.24■□□□□ 0.032e-10■□□□□ 10.7
YBX3P16989 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.18■□□□□ 0.022e-10■□□□□ 10.7
YBX3P16989 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.08■□□□□ 02e-10■□□□□ 10.7
YBX3P16989 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15□□□□□ -0.012e-10■□□□□ 10.7
YBX3P16989 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15□□□□□ -0.012e-10■□□□□ 10.7
YBX3P16989 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.59□□□□□ -0.072e-10■□□□□ 10.7
YBX3P16989 COPE-204ENST00000593827 601 ntTSL 326.25■■□□□ 1.792e-8■□□□□ 10.7
YBX3P16989 COPE-203ENST00000351079 907 ntTSL 2 BASIC25.23■■□□□ 1.632e-8■□□□□ 10.7
YBX3P16989 COPE-208ENST00000598969 1770 ntTSL 525.22■■□□□ 1.632e-8■□□□□ 10.7
YBX3P16989 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.452e-8■□□□□ 10.7
YBX3P16989 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.72■■□□□ 1.232e-8■□□□□ 10.7
YBX3P16989 COPE-202ENST00000349893 948 ntTSL 2 BASIC22.5■■□□□ 1.192e-8■□□□□ 10.7
YBX3P16989 COPE-206ENST00000597026 678 ntTSL 221.63■■□□□ 1.052e-8■□□□□ 10.7
YBX3P16989 AC002985.1-202ENST00000593484 584 ntAPPRIS P1 TSL 519.3■□□□□ 0.682e-8■□□□□ 10.7
YBX3P16989 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.312e-8■□□□□ 10.7
YBX3P16989 STIP1-211ENST00000543847 772 ntTSL 1 (best) BASIC12.2□□□□□ -0.461e-8■□□□□ 10.7
YBX3P16989 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC24.75■■□□□ 1.553e-9■□□□□ 10.7
YBX3P16989 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC22.5■■□□□ 1.193e-9■□□□□ 10.7
YBX3P16989 MAZ-213ENST00000568411 599 ntTSL 322.15■■□□□ 1.143e-9■□□□□ 10.7
YBX3P16989 MIB1-202ENST00000577749 726 ntTSL 56.34□□□□□ -1.392e-6■□□□□ 10.7
YBX3P16989 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.45■■□□□ 1.512e-9■□□□□ 10.7
Retrieved 100 of 29,075 protein–RNA pairs in 205.7 ms