RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 AEBP2Q6ZN18 517 aaPredicted RBP30.81■■■□□ 2.52
SPG11-212ENST00000558790 CHIC1Q5VXU3 224 aa30.26■■■□□ 2.43
SPG11-212ENST00000558790 PHF23Q9BUL5 403 aaPredicted RBP26.7■■□□□ 1.86
SPG11-212ENST00000558790 SENP3Q9H4L4 574 aaPredicted RBP25.99■■□□□ 1.75
SPG11-212ENST00000558790 PLPPR3Q6T4P5 718 aa24.66■■□□□ 1.54
SPG11-212ENST00000558790 NISCHQ9Y2I1 1504 aa24.61■■□□□ 1.53
SPG11-212ENST00000558790 FOXD1Q16676 465 aa24.17■■□□□ 1.46
SPG11-212ENST00000558790 ADRA2BP18089 450 aa23.5■■□□□ 1.35
SPG11-212ENST00000558790 PPP6R1Q9UPN7 881 aa23.5■■□□□ 1.35
SPG11-212ENST00000558790 PIAS4Q8N2W9 510 aaPredicted RBP22.86■■□□□ 1.25
SPG11-212ENST00000558790 ABCC9O60706 1549 aa22.74■■□□□ 1.23
SPG11-212ENST00000558790 CCDC180Q9P1Z9 1646 aa22.28■■□□□ 1.16
SPG11-212ENST00000558790 DNAJC5BQ9UF47 199 aa22.2■■□□□ 1.14
SPG11-212ENST00000558790 MSH5O43196 834 aa22.09■■□□□ 1.13
SPG11-212ENST00000558790 PPP4R3CPQ6ZMV5 832 aa21.81■■□□□ 1.08
SPG11-212ENST00000558790 KCNA4P22459 653 aa21.65■■□□□ 1.06
SPG11-212ENST00000558790 SCAF1Q9H7N4 1312 aaKnown RBP21.34■■□□□ 1.01
SPG11-212ENST00000558790 MAPK8IP2Q13387 824 aaPredicted RBP21.26■□□□□ 0.99
SPG11-212ENST00000558790 NCBP3Q53F19 620 aaKnown RBP21.23■□□□□ 0.99
SPG11-212ENST00000558790 RB1CC1Q8TDY2 1594 aa21.19■□□□□ 0.98
SPG11-212ENST00000558790 CNKSR2Q8WXI2 1034 aa21.09■□□□□ 0.97
SPG11-212ENST00000558790 PABPN1Q86U42 306 aaKnown RBP eCLIP21.03■□□□□ 0.96
SPG11-212ENST00000558790 NPM3O75607 178 aaKnown RBP21.01■□□□□ 0.95
SPG11-212ENST00000558790 NACADO15069 1562 aa20.98■□□□□ 0.95
SPG11-212ENST00000558790 UNC13AQ9UPW8 1703 aa20.94■□□□□ 0.94
SPG11-212ENST00000558790 DNAJC5Q9H3Z4 198 aa20.87■□□□□ 0.93
SPG11-212ENST00000558790 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
SPG11-212ENST00000558790 BICRAQ9NZM4 1560 aa20.73■□□□□ 0.91
SPG11-212ENST00000558790 DCAF8L2P0C7V8 631 aa20.65■□□□□ 0.9
SPG11-212ENST00000558790 MYO15BQ96JP2 1530 aa20.63■□□□□ 0.89
SPG11-212ENST00000558790 SLC4A1APQ9BWU0 796 aaKnown RBP20.63■□□□□ 0.89
SPG11-212ENST00000558790 RNF216Q9NWF9 866 aaPredicted RBP20.6■□□□□ 0.89
SPG11-212ENST00000558790 CECR2Q9BXF3 1484 aa20.51■□□□□ 0.87
SPG11-212ENST00000558790 CC2D2AQ9P2K1 1620 aa20.51■□□□□ 0.87
SPG11-212ENST00000558790 HOXD11P31277 338 aaPredicted RBP20.46■□□□□ 0.87
SPG11-212ENST00000558790 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
SPG11-212ENST00000558790 ZCCHC6Q5VYS8 1495 aaKnown RBP20.4■□□□□ 0.86
SPG11-212ENST00000558790 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
SPG11-212ENST00000558790 SHROOM4Q9ULL8 1493 aa20.28■□□□□ 0.84
SPG11-212ENST00000558790 SCRIBQ14160 1630 aa20.25■□□□□ 0.83
SPG11-212ENST00000558790 EIF4G1Q04637 1599 aaKnown RBP20.21■□□□□ 0.83
SPG11-212ENST00000558790 CSRNP3Q8WYN3 585 aa20.01■□□□□ 0.79
SPG11-212ENST00000558790 DCAF8L1A6NGE4 600 aa19.99■□□□□ 0.79
SPG11-212ENST00000558790 ZBTB22O15209 634 aa19.95■□□□□ 0.78
SPG11-212ENST00000558790 CUX2O14529 1486 aa19.84■□□□□ 0.77
SPG11-212ENST00000558790 SLC4A2P04920 1241 aa19.8■□□□□ 0.76
SPG11-212ENST00000558790 FOXD4L1Q9NU39 408 aa19.79■□□□□ 0.76
SPG11-212ENST00000558790 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
SPG11-212ENST00000558790 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
SPG11-212ENST00000558790 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
SPG11-212ENST00000558790 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.55■□□□□ 0.72
SPG11-212ENST00000558790 MYCNP04198 464 aaPredicted RBP19.36■□□□□ 0.69
SPG11-212ENST00000558790 NESP48681 1621 aa19.35■□□□□ 0.69
SPG11-212ENST00000558790 NCAPD3P42695 1498 aa19.32■□□□□ 0.68
SPG11-212ENST00000558790 THOC2Q8NI27 1593 aaKnown RBP19.31■□□□□ 0.68
SPG11-212ENST00000558790 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
SPG11-212ENST00000558790 U3KPZ7 1027 aaPredicted RBP19.29■□□□□ 0.68
SPG11-212ENST00000558790 ATAD2BQ9ULI0 1458 aa19.26■□□□□ 0.67
SPG11-212ENST00000558790 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
SPG11-212ENST00000558790 SMARCA2P51531 1590 aa19.24■□□□□ 0.67
SPG11-212ENST00000558790 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
SPG11-212ENST00000558790 KIF21AQ7Z4S6 1674 aa19.11■□□□□ 0.65
SPG11-212ENST00000558790 PEG3Q9GZU2 1588 aa19.1■□□□□ 0.65
SPG11-212ENST00000558790 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
SPG11-212ENST00000558790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
SPG11-212ENST00000558790 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
SPG11-212ENST00000558790 RNF39Q9H2S5 420 aa19■□□□□ 0.63
SPG11-212ENST00000558790 LAMC3Q9Y6N6 1575 aa18.99■□□□□ 0.63
SPG11-212ENST00000558790 ATXN8OSP0DMR3 200 aa18.98■□□□□ 0.63
SPG11-212ENST00000558790 SAMD1Q6SPF0 538 aaPredicted RBP18.98■□□□□ 0.63
SPG11-212ENST00000558790 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
SPG11-212ENST00000558790 ATF5Q9Y2D1 282 aaPredicted RBP18.94■□□□□ 0.62
SPG11-212ENST00000558790 WIZO95785 1651 aa18.8■□□□□ 0.6
SPG11-212ENST00000558790 RIMBP3CA6NJZ7 1639 aa18.8■□□□□ 0.6
SPG11-212ENST00000558790 RIMBP3BA6NNM3 1639 aa18.8■□□□□ 0.6
SPG11-212ENST00000558790 RIMBP3Q9UFD9 1639 aa18.8■□□□□ 0.6
SPG11-212ENST00000558790 PDS5BQ9NTI5 1447 aa18.78■□□□□ 0.6
SPG11-212ENST00000558790 WDR62O43379 1518 aa18.75■□□□□ 0.59
SPG11-212ENST00000558790 MRC2Q9UBG0 1479 aa18.74■□□□□ 0.59
SPG11-212ENST00000558790 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
SPG11-212ENST00000558790 C1QBPQ07021 282 aaKnown RBP18.73■□□□□ 0.59
SPG11-212ENST00000558790 APLP2Q06481 763 aa18.72■□□□□ 0.59
SPG11-212ENST00000558790 SPINK5Q9NQ38 1064 aaPredicted RBP18.71■□□□□ 0.59
SPG11-212ENST00000558790 CADPSQ9ULU8 1353 aa18.69■□□□□ 0.58
SPG11-212ENST00000558790 CEP164Q9UPV0 1460 aa18.59■□□□□ 0.57
SPG11-212ENST00000558790 CAPN15O75808 1086 aa18.59■□□□□ 0.57
SPG11-212ENST00000558790 TRHP20396 242 aaPredicted RBP18.58■□□□□ 0.56
SPG11-212ENST00000558790 ARHGEF11O15085 1522 aa18.58■□□□□ 0.56
SPG11-212ENST00000558790 FANCD2Q9BXW9 1451 aa18.54■□□□□ 0.56
SPG11-212ENST00000558790 ZNF219Q9P2Y4 722 aaPredicted RBP18.54■□□□□ 0.56
SPG11-212ENST00000558790 PRDM2Q13029 1718 aa18.54■□□□□ 0.56
SPG11-212ENST00000558790 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
SPG11-212ENST00000558790 CFTRP13569 1480 aa18.5■□□□□ 0.55
SPG11-212ENST00000558790 RSF1Q96T23 1441 aaPredicted RBP18.47■□□□□ 0.55
SPG11-212ENST00000558790 CYB5RLQ6IPT4 315 aa18.45■□□□□ 0.54
SPG11-212ENST00000558790 URB2Q14146 1524 aaKnown RBP18.44■□□□□ 0.54
SPG11-212ENST00000558790 ARAP1Q96P48 1450 aa18.37■□□□□ 0.53
SPG11-212ENST00000558790 CACNB1Q02641 598 aaPredicted RBP18.34■□□□□ 0.53
SPG11-212ENST00000558790 ABCB7O75027 752 aa18.32■□□□□ 0.52
SPG11-212ENST00000558790 POLA2Q14181 598 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms