RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
SPG11-223ENST00000560858 CHIC1Q5VXU3 224 aa16.3■□□□□ 0.2
SPG11-223ENST00000560858 SENP3Q9H4L4 574 aaPredicted RBP14.91□□□□□ -0.02
SPG11-223ENST00000560858 PHF23Q9BUL5 403 aaPredicted RBP14.66□□□□□ -0.06
SPG11-223ENST00000560858 FOXD1Q16676 465 aa13.87□□□□□ -0.19
SPG11-223ENST00000560858 POTEDQ86YR6 584 aa13.18□□□□□ -0.3
SPG11-223ENST00000560858 MSH5O43196 834 aa13.14□□□□□ -0.31
SPG11-223ENST00000560858 PIAS4Q8N2W9 510 aaPredicted RBP12.94□□□□□ -0.34
SPG11-223ENST00000560858 PLPPR3Q6T4P5 718 aa12.93□□□□□ -0.34
SPG11-223ENST00000560858 PPP6R1Q9UPN7 881 aa12.76□□□□□ -0.37
SPG11-223ENST00000560858 ADRA2BP18089 450 aa12.73□□□□□ -0.37
SPG11-223ENST00000560858 SCAF1Q9H7N4 1312 aaKnown RBP11.77□□□□□ -0.53
SPG11-223ENST00000560858 MAPK8IP2Q13387 824 aaPredicted RBP11.75□□□□□ -0.53
SPG11-223ENST00000560858 DMRT2Q9Y5R5 561 aa11.75□□□□□ -0.53
SPG11-223ENST00000560858 CACNB1Q02641 598 aaPredicted RBP11.43□□□□□ -0.58
SPG11-223ENST00000560858 DCAF8L1A6NGE4 600 aa11.34□□□□□ -0.59
SPG11-223ENST00000560858 PPP4R3CPQ6ZMV5 832 aa11.27□□□□□ -0.61
SPG11-223ENST00000560858 HOXD11P31277 338 aaPredicted RBP11.22□□□□□ -0.61
SPG11-223ENST00000560858 RNF39Q9H2S5 420 aa11.15□□□□□ -0.62
SPG11-223ENST00000560858 CNKSR2Q8WXI2 1034 aa11.14□□□□□ -0.63
SPG11-223ENST00000560858 RNF216Q9NWF9 866 aaPredicted RBP11.1□□□□□ -0.63
SPG11-223ENST00000560858 C1QBPQ07021 282 aaKnown RBP11.02□□□□□ -0.65
SPG11-223ENST00000560858 DNAJC5BQ9UF47 199 aa10.93□□□□□ -0.66
SPG11-223ENST00000560858 NCBP3Q53F19 620 aaKnown RBP10.84□□□□□ -0.67
SPG11-223ENST00000560858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.75□□□□□ -0.69
SPG11-223ENST00000560858 NPM3O75607 178 aaKnown RBP10.59□□□□□ -0.71
SPG11-223ENST00000560858 U3KPZ7 1027 aaPredicted RBP10.42□□□□□ -0.74
SPG11-223ENST00000560858 CAPN15O75808 1086 aa10.41□□□□□ -0.74
SPG11-223ENST00000560858 DSG3P32926 999 aa10.35□□□□□ -0.75
SPG11-223ENST00000560858 SPINK5Q9NQ38 1064 aaPredicted RBP10.34□□□□□ -0.75
SPG11-223ENST00000560858 POTEHQ6S545 545 aa10.31□□□□□ -0.76
SPG11-223ENST00000560858 APLP2Q06481 763 aa10.23□□□□□ -0.77
SPG11-223ENST00000560858 TRHP20396 242 aaPredicted RBP10.18□□□□□ -0.78
SPG11-223ENST00000560858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.17□□□□□ -0.78
SPG11-223ENST00000560858 HNRNPUL2Q1KMD3 747 aaKnown RBP10.17□□□□□ -0.78
SPG11-223ENST00000560858 KCNA4P22459 653 aa10.16□□□□□ -0.78
SPG11-223ENST00000560858 ZNF219Q9P2Y4 722 aaPredicted RBP10.16□□□□□ -0.78
SPG11-223ENST00000560858 SLC4A2P04920 1241 aa10.15□□□□□ -0.78
SPG11-223ENST00000560858 ABCB7O75027 752 aa10.09□□□□□ -0.79
SPG11-223ENST00000560858 SAMD1Q6SPF0 538 aaPredicted RBP10.06□□□□□ -0.8
SPG11-223ENST00000560858 RBM42Q9BTD8 480 aaKnown RBP9.96□□□□□ -0.82
SPG11-223ENST00000560858 POLA2Q14181 598 aa9.85□□□□□ -0.83
SPG11-223ENST00000560858 MYCNP04198 464 aaPredicted RBP9.84□□□□□ -0.83
SPG11-223ENST00000560858 CHRDL2Q6WN34 429 aa9.8□□□□□ -0.84
SPG11-223ENST00000560858 ZBTB12Q9Y330 459 aaPredicted RBP9.67□□□□□ -0.86
SPG11-223ENST00000560858 AKT1S1Q96B36 256 aa9.65□□□□□ -0.86
SPG11-223ENST00000560858 SLC4A1APQ9BWU0 796 aaKnown RBP9.59□□□□□ -0.87
SPG11-223ENST00000560858 FOXD4L1Q9NU39 408 aa9.59□□□□□ -0.87
SPG11-223ENST00000560858 SP7Q8TDD2 431 aaPredicted RBP9.55□□□□□ -0.88
SPG11-223ENST00000560858 ATF5Q9Y2D1 282 aaPredicted RBP9.55□□□□□ -0.88
SPG11-223ENST00000560858 REM2Q8IYK8 340 aaPredicted RBP9.54□□□□□ -0.88
SPG11-223ENST00000560858 OSCARQ8IYS5 282 aa9.49□□□□□ -0.89
SPG11-223ENST00000560858 PIP4P2Q8N4L2 257 aa9.48□□□□□ -0.89
SPG11-223ENST00000560858 HAX1O00165 279 aa9.45□□□□□ -0.9
SPG11-223ENST00000560858 PITPNM1O00562 1244 aa9.41□□□□□ -0.9
SPG11-223ENST00000560858 FXR2P51116 673 aaKnown RBP eCLIP9.39□□□□□ -0.91
SPG11-223ENST00000560858 ATXN8OSP0DMR3 200 aa9.35□□□□□ -0.91
SPG11-223ENST00000560858 FBLN2P98095 1184 aa9.32□□□□□ -0.92
SPG11-223ENST00000560858 SPDYE2BA6NHP3 402 aa9.31□□□□□ -0.92
SPG11-223ENST00000560858 SPDYE6P0CI01 402 aa9.31□□□□□ -0.92
SPG11-223ENST00000560858 SPDYE2Q495Y8 402 aa9.31□□□□□ -0.92
SPG11-223ENST00000560858 ZBTB22O15209 634 aa9.28□□□□□ -0.92
SPG11-223ENST00000560858 SPDYE1Q8NFV5 336 aaPredicted RBP9.23□□□□□ -0.93
SPG11-223ENST00000560858 CLEC11AQ9Y240 323 aa9.23□□□□□ -0.93
SPG11-223ENST00000560858 PRKAR2AP13861 404 aaKnown RBP9.21□□□□□ -0.94
SPG11-223ENST00000560858 EVX2Q03828 476 aa9.21□□□□□ -0.94
SPG11-223ENST00000560858 ZNF692Q9BU19 519 aaPredicted RBP9.18□□□□□ -0.94
SPG11-223ENST00000560858 MKRN4PQ13434 485 aaPredicted RBP9.11□□□□□ -0.95
SPG11-223ENST00000560858 SSUH2Q9Y2M2 353 aa9.11□□□□□ -0.95
SPG11-223ENST00000560858 C19orf67A6NJJ6 358 aa9.09□□□□□ -0.95
SPG11-223ENST00000560858 PRR29P0C7W0 189 aa9.05□□□□□ -0.96
SPG11-223ENST00000560858 GABBR2O75899 941 aa9.04□□□□□ -0.96
SPG11-223ENST00000560858 PABPN1Q86U42 306 aaKnown RBP eCLIP9.01□□□□□ -0.97
SPG11-223ENST00000560858 CHADLQ6NUI6 762 aa9□□□□□ -0.97
SPG11-223ENST00000560858 LHX8Q68G74 356 aa8.97□□□□□ -0.97
SPG11-223ENST00000560858 CLCN6P51797 869 aa8.91□□□□□ -0.98
SPG11-223ENST00000560858 CD44P16070 742 aaKnown RBP8.89□□□□□ -0.99
SPG11-223ENST00000560858 FARP1Q9Y4F1 1045 aaPredicted RBP8.89□□□□□ -0.99
SPG11-223ENST00000560858 DCBLD2Q96PD2 775 aa8.81□□□□□ -1
SPG11-223ENST00000560858 POTEIP0CG38 1075 aa8.79□□□□□ -1
SPG11-223ENST00000560858 STAG3Q9UJ98 1225 aa8.77□□□□□ -1.01
SPG11-223ENST00000560858 ZRANB1Q9UGI0 708 aa8.74□□□□□ -1.01
SPG11-223ENST00000560858 ZNF579Q8NAF0 562 aaKnown RBP8.73□□□□□ -1.01
SPG11-223ENST00000560858 CSRNP3Q8WYN3 585 aa8.69□□□□□ -1.02
SPG11-223ENST00000560858 CREBZFQ9NS37 354 aa8.69□□□□□ -1.02
SPG11-223ENST00000560858 PAK3O75914 559 aaPredicted RBP8.68□□□□□ -1.02
SPG11-223ENST00000560858 SPDYE4A6NLX3 237 aa8.63□□□□□ -1.03
SPG11-223ENST00000560858 GALR2O43603 387 aaPredicted RBP8.63□□□□□ -1.03
SPG11-223ENST00000560858 NPM1P06748 294 aaKnown RBP eCLIP8.61□□□□□ -1.03
SPG11-223ENST00000560858 PLSCR2Q9NRY7 297 aa8.61□□□□□ -1.03
SPG11-223ENST00000560858 OTUD5Q96G74 571 aa8.55□□□□□ -1.04
SPG11-223ENST00000560858 PHF12Q96QT6 1004 aa8.55□□□□□ -1.04
SPG11-223ENST00000560858 POTEB2H3BUK9 544 aa8.49□□□□□ -1.05
SPG11-223ENST00000560858 MNX1P50219 401 aaPredicted RBP8.49□□□□□ -1.05
SPG11-223ENST00000560858 C7P10643 843 aa8.46□□□□□ -1.06
SPG11-223ENST00000560858 PELP1Q8IZL8 1130 aaKnown RBP8.46□□□□□ -1.06
SPG11-223ENST00000560858 EHMT2Q96KQ7 1210 aa8.46□□□□□ -1.06
SPG11-223ENST00000560858 POTEMA6NI47 508 aa8.45□□□□□ -1.06
SPG11-223ENST00000560858 SLC39A7Q92504 469 aa8.45□□□□□ -1.06
SPG11-223ENST00000560858 ASTLQ6HA08 431 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 157.8 ms