Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL11A1P12107 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.95■□□□□ 0.46
COL11A1P12107 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.95■□□□□ 0.46
COL11A1P12107 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.95■□□□□ 0.46
COL11A1P12107 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL11A1P12107 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL11A1P12107 AC069224.1-201ENST00000566372 1715 ntBASIC17.94■□□□□ 0.46
COL11A1P12107 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL11A1P12107 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
COL11A1P12107 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.94■□□□□ 0.46
COL11A1P12107 ENPP7P5-201ENST00000541031 1031 ntBASIC17.94■□□□□ 0.46
COL11A1P12107 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL11A1P12107 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.94■□□□□ 0.46
COL11A1P12107 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL11A1P12107 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
COL11A1P12107 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
COL11A1P12107 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.94■□□□□ 0.46
COL11A1P12107 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL11A1P12107 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.93■□□□□ 0.46
COL11A1P12107 BRWD1P1-201ENST00000401091 371 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 ACTBP8-201ENST00000403258 1108 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 FO681548.1-201ENST00000455617 1132 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL11A1P12107 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.93■□□□□ 0.46
COL11A1P12107 AP001063.1-201ENST00000568332 529 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.93■□□□□ 0.46
COL11A1P12107 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.93■□□□□ 0.46
COL11A1P12107 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.93■□□□□ 0.46
COL11A1P12107 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL11A1P12107 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 AP000812.2-201ENST00000538934 718 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 AC079316.1-201ENST00000548397 411 ntBASIC17.93■□□□□ 0.46
COL11A1P12107 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.93■□□□□ 0.46
COL11A1P12107 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL11A1P12107 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL11A1P12107 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.92■□□□□ 0.46
COL11A1P12107 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.92■□□□□ 0.46
COL11A1P12107 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
COL11A1P12107 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.92■□□□□ 0.46
COL11A1P12107 AC026471.1-201ENST00000564629 3026 ntBASIC17.92■□□□□ 0.46
COL11A1P12107 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
COL11A1P12107 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.92■□□□□ 0.46
COL11A1P12107 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.92■□□□□ 0.46
COL11A1P12107 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL11A1P12107 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL11A1P12107 AC007969.1-201ENST00000433675 447 ntBASIC17.92■□□□□ 0.46
COL11A1P12107 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL11A1P12107 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms