Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC9.79□□□□□ -0.84
APOBP04114 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 MIR4783-201ENST00000580343 82 ntBASIC9.79□□□□□ -0.84
APOBP04114 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC9.79□□□□□ -0.84
APOBP04114 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
APOBP04114 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC9.79□□□□□ -0.84
APOBP04114 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC9.79□□□□□ -0.84
APOBP04114 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC9.79□□□□□ -0.84
APOBP04114 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC9.79□□□□□ -0.84
APOBP04114 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
APOBP04114 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 MIR769-201ENST00000390225 118 ntBASIC9.78□□□□□ -0.84
APOBP04114 SUN1-204ENST00000403868 978 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 RPSAP31-201ENST00000416648 895 ntBASIC9.78□□□□□ -0.84
APOBP04114 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 NPM1P43-201ENST00000558669 786 ntBASIC9.78□□□□□ -0.84
APOBP04114 IFT20-206ENST00000578122 834 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 IFT20-208ENST00000578985 831 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC9.78□□□□□ -0.84
APOBP04114 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 AP005019.2-201ENST00000615104 511 ntBASIC9.78□□□□□ -0.84
APOBP04114 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC9.78□□□□□ -0.84
APOBP04114 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 AC079178.1-201ENST00000420915 656 ntBASIC9.78□□□□□ -0.84
APOBP04114 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 AC005357.2-202ENST00000590507 1060 ntBASIC9.78□□□□□ -0.84
APOBP04114 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 DPM3-202ENST00000368399 517 ntBASIC9.78□□□□□ -0.84
APOBP04114 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
APOBP04114 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 AC103988.2-201ENST00000561804 725 ntBASIC9.78□□□□□ -0.84
APOBP04114 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 MEG3_2.1-201ENST00000611456 105 ntBASIC9.78□□□□□ -0.84
APOBP04114 PCBP2-OT1-201ENST00000634357 590 ntBASIC9.78□□□□□ -0.84
APOBP04114 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC9.78□□□□□ -0.84
APOBP04114 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC9.78□□□□□ -0.84
APOBP04114 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
APOBP04114 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC9.77□□□□□ -0.84
APOBP04114 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC9.77□□□□□ -0.84
APOBP04114 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC9.77□□□□□ -0.84
APOBP04114 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.84
APOBP04114 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.84
APOBP04114 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 ACKR1-201ENST00000368121 1240 ntBASIC9.77□□□□□ -0.84
APOBP04114 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC9.77□□□□□ -0.84
APOBP04114 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
APOBP04114 MIR4750-201ENST00000584564 56 ntBASIC9.77□□□□□ -0.84
APOBP04114 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC9.77□□□□□ -0.84
APOBP04114 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC9.77□□□□□ -0.84
APOBP04114 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC9.77□□□□□ -0.85
APOBP04114 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
APOBP04114 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
APOBP04114 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms