Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.9■□□□□ 0.94
COL3A1P02461 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
COL3A1P02461 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 AL512384.1-201ENST00000406683 331 ntBASIC20.9■□□□□ 0.94
COL3A1P02461 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.9■□□□□ 0.94
COL3A1P02461 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.89■□□□□ 0.94
COL3A1P02461 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.94
COL3A1P02461 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.89■□□□□ 0.94
COL3A1P02461 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.89■□□□□ 0.94
COL3A1P02461 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.89■□□□□ 0.94
COL3A1P02461 AL359711.2-201ENST00000563105 872 ntBASIC20.89■□□□□ 0.94
COL3A1P02461 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.89■□□□□ 0.94
COL3A1P02461 AC008735.3-201ENST00000596646 500 ntBASIC20.89■□□□□ 0.94
COL3A1P02461 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.89■□□□□ 0.94
COL3A1P02461 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL3A1P02461 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.89■□□□□ 0.94
COL3A1P02461 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.89■□□□□ 0.93
COL3A1P02461 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL3A1P02461 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL3A1P02461 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.89■□□□□ 0.93
COL3A1P02461 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL3A1P02461 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL3A1P02461 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL3A1P02461 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL3A1P02461 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 GIMAP3P-201ENST00000495150 836 ntBASIC20.88■□□□□ 0.93
COL3A1P02461 AC026410.3-201ENST00000514280 936 ntBASIC20.88■□□□□ 0.93
COL3A1P02461 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC20.88■□□□□ 0.93
COL3A1P02461 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL3A1P02461 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 DRD5P1-201ENST00000456605 1438 ntBASIC20.88■□□□□ 0.93
COL3A1P02461 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.88■□□□□ 0.93
COL3A1P02461 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.88■□□□□ 0.93
COL3A1P02461 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.88■□□□□ 0.93
COL3A1P02461 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL3A1P02461 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.88■□□□□ 0.93
COL3A1P02461 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.88■□□□□ 0.93
COL3A1P02461 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.88■□□□□ 0.93
COL3A1P02461 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.88■□□□□ 0.93
COL3A1P02461 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.88■□□□□ 0.93
COL3A1P02461 AC005252.2-201ENST00000624630 1141 ntBASIC20.88■□□□□ 0.93
COL3A1P02461 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL3A1P02461 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 AC127383.1-201ENST00000444697 1800 ntBASIC20.87■□□□□ 0.93
COL3A1P02461 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC20.87■□□□□ 0.93
COL3A1P02461 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL3A1P02461 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms