Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC092552.1-201ENST00000547243 906 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 AC036164.1-201ENST00000570544 333 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 AL008721.1-201ENST00000609964 604 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.31■□□□□ 0.2
HOXC11O43248 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HOXC11O43248 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HOXC11O43248 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXC11O43248 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 CLK3P2-201ENST00000427566 1453 ntBASIC16.3■□□□□ 0.2
HOXC11O43248 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HOXC11O43248 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXC11O43248 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HOXC11O43248 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXC11O43248 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXC11O43248 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC11O43248 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXC11O43248 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXC11O43248 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXC11O43248 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC11O43248 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXC11O43248 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 CDC14C-201ENST00000428251 1719 ntBASIC16.29■□□□□ 0.2
HOXC11O43248 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 AC079776.1-201ENST00000401540 1152 ntBASIC16.29■□□□□ 0.2
HOXC11O43248 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 TTTY23B-201ENST00000442790 549 ntBASIC16.29■□□□□ 0.2
HOXC11O43248 PHKG1P2-201ENST00000457537 863 ntBASIC16.29■□□□□ 0.2
HOXC11O43248 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.29■□□□□ 0.2
HOXC11O43248 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXC11O43248 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.29■□□□□ 0.2
HOXC11O43248 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HOXC11O43248 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC11O43248 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC11O43248 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC11O43248 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms