Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.02□□□□□ -0.32
HMGB3O15347 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HMGB3O15347 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.02□□□□□ -0.32
HMGB3O15347 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
HMGB3O15347 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.02□□□□□ -0.32
HMGB3O15347 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HMGB3O15347 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
HMGB3O15347 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
HMGB3O15347 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 HBZP1-201ENST00000354915 429 ntBASIC13.02□□□□□ -0.33
HMGB3O15347 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.02□□□□□ -0.33
HMGB3O15347 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
HMGB3O15347 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.02□□□□□ -0.33
HMGB3O15347 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
HMGB3O15347 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HMGB3O15347 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.02□□□□□ -0.33
HMGB3O15347 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
HMGB3O15347 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC13.01□□□□□ -0.33
HMGB3O15347 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 LIN28AP1-201ENST00000429574 405 ntBASIC13.01□□□□□ -0.33
HMGB3O15347 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC13.01□□□□□ -0.33
HMGB3O15347 ATP5G1P1-201ENST00000448724 379 ntBASIC13.01□□□□□ -0.33
HMGB3O15347 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC13.01□□□□□ -0.33
HMGB3O15347 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC13.01□□□□□ -0.33
HMGB3O15347 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC13.01□□□□□ -0.33
HMGB3O15347 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.01□□□□□ -0.33
HMGB3O15347 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 AC148477.5-201ENST00000625164 1645 ntBASIC13.01□□□□□ -0.33
HMGB3O15347 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 SNX33P1-201ENST00000592116 1762 ntBASIC13.01□□□□□ -0.33
HMGB3O15347 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.01□□□□□ -0.33
HMGB3O15347 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HMGB3O15347 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HMGB3O15347 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms