Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE3Q6ZMZ3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 AC009093.7-201ENST00000623853 1223 ntBASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
SYNE3Q6ZMZ3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SYNE3Q6ZMZ3 AL365203.3-201ENST00000609742 2057 ntBASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC007950.2-201ENST00000615045 2347 ntBASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC067930.6-201ENST00000623257 4947 ntBASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.97■□□□□ 0.63
SYNE3Q6ZMZ3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms