Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CNKSR3Q6P9H4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 AC025279.2-201ENST00000569730 653 ntBASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 DRD5P1-201ENST00000456605 1438 ntBASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNKSR3Q6P9H4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 RNF165-205ENST00000588679 2904 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AC134407.2-201ENST00000625089 1978 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 MIR326-201ENST00000362220 95 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AC097359.3-201ENST00000603982 1210 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 RNF216P1-203ENST00000404404 2427 ntBASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.1■□□□□ 0.33
CNKSR3Q6P9H4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.09■□□□□ 0.33
CNKSR3Q6P9H4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms