Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.38■□□□□ 0.37
KRT39Q6A163 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.38■□□□□ 0.37
KRT39Q6A163 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 AC003101.2-201ENST00000612557 442 ntBASIC17.38■□□□□ 0.37
KRT39Q6A163 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.38■□□□□ 0.37
KRT39Q6A163 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.38■□□□□ 0.37
KRT39Q6A163 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.38■□□□□ 0.37
KRT39Q6A163 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.38■□□□□ 0.37
KRT39Q6A163 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.38■□□□□ 0.37
KRT39Q6A163 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.38■□□□□ 0.37
KRT39Q6A163 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
KRT39Q6A163 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
KRT39Q6A163 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
KRT39Q6A163 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
KRT39Q6A163 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.37■□□□□ 0.37
KRT39Q6A163 SPDYE7P-202ENST00000420373 878 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 HLA-J-203ENST00000494367 1087 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.37■□□□□ 0.37
KRT39Q6A163 BANF1P1-201ENST00000553684 263 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 AC105021.1-202ENST00000570572 669 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.37■□□□□ 0.37
KRT39Q6A163 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.37■□□□□ 0.37
KRT39Q6A163 AC007967.4-201ENST00000614700 386 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 LINC00628-201ENST00000628516 1289 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.37■□□□□ 0.37
KRT39Q6A163 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 PAUPAR-201ENST00000630360 2965 ntBASIC17.37■□□□□ 0.37
KRT39Q6A163 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.37■□□□□ 0.37
KRT39Q6A163 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
KRT39Q6A163 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
KRT39Q6A163 AP001160.2-201ENST00000596071 487 ntBASIC17.36■□□□□ 0.37
KRT39Q6A163 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.36■□□□□ 0.37
KRT39Q6A163 MIR6080-201ENST00000617359 66 ntBASIC17.36■□□□□ 0.37
KRT39Q6A163 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
KRT39Q6A163 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
KRT39Q6A163 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.36■□□□□ 0.37
KRT39Q6A163 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
KRT39Q6A163 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT39Q6A163 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms