Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ALG1L5P-201ENST00000482043 771 ntBASIC16.26■□□□□ 0.19
PTPN4P29074 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.26■□□□□ 0.19
PTPN4P29074 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN4P29074 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN4P29074 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.26■□□□□ 0.19
PTPN4P29074 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTPN4P29074 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 AL021920.2-201ENST00000624828 1351 ntBASIC16.26■□□□□ 0.19
PTPN4P29074 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN4P29074 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PTPN4P29074 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 ACTG1P4-201ENST00000425123 1122 ntBASIC16.25■□□□□ 0.19
PTPN4P29074 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN4P29074 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 MKNK2P1-201ENST00000437526 628 ntBASIC16.25■□□□□ 0.19
PTPN4P29074 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 SNHG9-202ENST00000564014 471 ntBASIC16.25■□□□□ 0.19
PTPN4P29074 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.25■□□□□ 0.19
PTPN4P29074 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 AC004877.2-201ENST00000623941 599 ntBASIC16.25■□□□□ 0.19
PTPN4P29074 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.25■□□□□ 0.19
PTPN4P29074 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTPN4P29074 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTPN4P29074 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN4P29074 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN4P29074 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PTPN4P29074 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 SSR4P1-203ENST00000599569 2260 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 TCAF2P1-201ENST00000291129 2421 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.24■□□□□ 0.19
PTPN4P29074 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 AC254562.1-201ENST00000417586 456 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
PTPN4P29074 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN4P29074 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.24■□□□□ 0.19
PTPN4P29074 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN4P29074 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
PTPN4P29074 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
PTPN4P29074 AC010507.1-201ENST00000633895 436 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms