Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC3O15379 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
HDAC3O15379 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.72■□□□□ 0.11
HDAC3O15379 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HDAC3O15379 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 AC092127.1-201ENST00000567093 3455 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC3O15379 AC108073.2-201ENST00000464002 357 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 CXCL1P1-201ENST00000502804 216 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 AC073648.2-201ENST00000510116 352 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC3O15379 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.71■□□□□ 0.11
HDAC3O15379 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.71■□□□□ 0.11
HDAC3O15379 LINC01711-201ENST00000598340 967 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 AC004790.2-201ENST00000623588 572 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 AC005593.1-201ENST00000624894 515 ntBASIC15.71■□□□□ 0.11
HDAC3O15379 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC3O15379 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.71■□□□□ 0.11
HDAC3O15379 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.71■□□□□ 0.11
HDAC3O15379 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HDAC3O15379 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC3O15379 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC3O15379 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
HDAC3O15379 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.71■□□□□ 0.1
HDAC3O15379 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC3O15379 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC3O15379 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
HDAC3O15379 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HDAC3O15379 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
HDAC3O15379 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.1
HDAC3O15379 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 AC112693.3-201ENST00000624819 1983 ntBASIC15.7■□□□□ 0.1
HDAC3O15379 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.7■□□□□ 0.1
HDAC3O15379 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 AC105339.3-201ENST00000560043 636 ntBASIC15.7■□□□□ 0.1
HDAC3O15379 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 MIR4321-201ENST00000592276 80 ntBASIC15.7■□□□□ 0.1
HDAC3O15379 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.7■□□□□ 0.1
HDAC3O15379 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 CICP24-201ENST00000605464 2705 ntBASIC15.7■□□□□ 0.1
HDAC3O15379 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HDAC3O15379 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.7■□□□□ 0.1
HDAC3O15379 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HDAC3O15379 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms